Ragothaman Yennamalli
@StructBioinfo
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Sr. Asst Prof @SastraUniv | Bioinformatician, He/Him. co-organizer #YIM2024 , Asso.Ed @csb_journal , Ed BMC Bioinformatics, Protein Science
India
Joined May 2013
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Pinned Tweet
🚨🚨🚨Our latest work
@SastraUniv
got featured in
@NatureInd
!!!🚨🚨🚨
@s_shricharan
@SankarMaheshR
@SubachandranJK
The work was funded by
@ugc_india
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My students have been exasperated with their projects not going as they intended. So, we celebrated with a pity party laughing at the failures with softy ice cream. Literally, celebrating every step of the process. 😂🤣
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Guess what happened yesterday? We got a grant proposal funded!!!!! This is the third grant for the lab in three years. More power to us to do good science.
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If any students are interested in spending the summer at Yennamalli lab doing some bioinfo projects, please DM me or email to ragothaman
@scbt
.sastra.edu
Happy to host!
#internships
#summer
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Announcement
#2
(actually the 6th):
With the blessings of Almighty, my parents, and well wishers I have been promoted to Senior Assistant Professor-I
@SastraUniv
! 🙏🏼
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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India has a huge untapped potential in UG research. Sadly, either PIs are delegating PhD student's work to them or making them repeat an experiment for the sake of completing the project. Also, we need something similar to NSF's REU.
Submitted the lab's first full-length conference paper last week. First author: UG summer 2022 intern. ;)
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🥳Woohoo!!! 🎉Ending the year with a bang!!!! 🎆🎇Best news received today!!! Thanks to Aruldoss (1st author) and U Venkatasubramaniam sir (collaborator). 🙏
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Got hacked, I think!
Came back to work after vacation, there were some chocolates on the desk. I login and I see this...🤣😂🤣
Any ideas?
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🥰Excited is an understatement as board the flight to attend
@BiophysicalSoc
#bps2024
conf at Philly 🇺🇲, after 10 yrs! Made possible thru travel award 🙏. I will be presenting work done by
@Dharineesh17
,
@Karrrtthikeya
, Pavina, and Mezya at
@SastraUniv
on Human Tranglutaminase2.
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📣I am now officially an Associate Editor for the Computational and Structural Biotechnology Journal ().
@CSB_Journal
🥳
Send your manuscripts my way!
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This is a subtweet!
I can't believe many in India have toxic behaviour and perpetuate toxicity to their students, and they get awards and stuff!
Does no one care to be a good human, first?
Ugh, 😩!
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🥳Happy to share the news that I have been invited to join the Editorial board of BMC Bioinformatics
@BioMedCentral
, a well respected journal in the BMC series in the area of Bioinformatics and Computational Biology. 🥳
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Ok. Gotta admit, this is a super duper cool idea of a poster presentation!!!! 😻
Great Idea for Poster presentation...!!!
Via Caroline O'Donnell/O'Flaherty Lab (Linkedin)
#scicomm
#scienceoutreach
#sciencetalk
#scienceposter
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I got a stamp, just for the heck of it! 😜🤣 It has been fun stamping things that belong to the lab!
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🎉🎉Announcement
#3
!!!🎉🎉
Extremely happy to celebrate that
@MenakaRaj12
and
@s_shricharan
from our lab have won 2nd place in
@iscb
wikipedia competition for editing the Comparative Genomics wiki! Cash of $250 and one year membership to the society!!!
@Wikipedia
@SastraUniv
👏🏼👏🏼
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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Celebratory post-conference dinner with waiters photobombing us! 🤣
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Announcement
#1
:
The Yennamalli lab is expanding!!!
A new PhD student will join and I was their first choice!
☺️
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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🎉🎉Announcement
#4
!🎉🎉
Mini grant funded ($500) from
@BiophysicalSoc
to conduct a one day symposium later this year!!! Thanks to the Membership committee of BPS!!!
🙏🏼🙏🏼🙏🏼🙌🏼🙌🏼🙌🏼 🥳🥳🥳
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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I mean what are the chances, right?
@vikasnavaratna
and I were on the same flight AND adjacent seats. We had more science discussions, career, mentoring, life, and other things. Now, that is a true coincidence!!! He was the perfect host at DTW airport! 🙏
Guess whom I met at
#BPS2024
@BiophysicalSoc
?
@vikasnavaratna
and it was a great meeting over coffee and injera breakfast.
@SankarMaheshR
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Paper accepted!!!!!
Waking up to this email made the struggle worth it. 😍 🙏
Congratulations to
@s_shricharan
@SankarMaheshR
and Subachandran for all the hard work and perseverance. 👏👏👏 This work was funded by
@ugc_india
BSR grant.
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Waking up to a manuscript acceptance email is the best way to start the day!
An amazing collaboration with
@ShivNadarUniv
! Congrats
@Shrivaish1
!!!! Good contribution to the field.
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🥳🥳🥳Announcement
#6
!!! Along with
@Florence_Tama
from
@NagoyaUniv
we are editing a special issue of
@BiophysicalSoc
journal
@BiophysJ
"Applications of Coarse-grained and Multiscale modeling". Kindly contact for potential submissions and for details. Deets 👇1/n
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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🚨📣🚨📣I am recruiting!!! Please spread the word 🙏🏼! 🚨📣🚨📣
@IndiaBioscience
@abandopa
@areejitsamal
@biopatrika
@VoicesofIndAcad
@AcademicChatter
@_KarishmaK
@abhijit_MLab
@APBioNetorg
@AthiNaganathan
@cbm2577
@ShilpySharma14
@JMadhuprakash
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Indian Science Twitter! Asking for help. How to cover APC charges for a journal paper? Journal is not giving discount and I have no contingency money to pay for it. Any idea that can help us?
@abandopa
@AdhesionLab
@DivyaKumar182
@aktilaiyan
@Abhadra7
@ShilpySharma14
@cbm2577
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One of the organizers of
#YIM2024
who worked seamlessly and deserves our deep appreciation is
@varun_iiser
. He was tirelessly working behind the scenes and the success of Day2
@iiserbhopal
is all him. I have found a friend and I will continue it beyond YIM! Thanks! 🙏🏽🙏🏽🙏🏽
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@madamscientist
@BioRender
Here is the alternate:
Not many but it is community driven and open source
Also, one can create using
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🎉🎉🎉Announcement
#5
!!! Looking forward to attend
#ISMB2024
@iscb
at Montreal 🇨🇦🍁 and to give a research talk, to chair a special session, and present posters!!! Also looking forward to meeting friends and collaborators. 🙏🏼 for travel award from EvolCompGen COSI!!!🎉🎉🎉
🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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🎉🎉🎉In the last two days, something big happened in the Yennamalli lab! Watch out for two separate announcements in this space!!! I am so excited!!!
😍🤗☺️
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Finally we met!🎉🎉🎉 You are all witness to the historical event!!! You can see me starstruck! 🤩
We discussed science, Indian science, a little bit of our work, future plans, etc. Thanks for taking time out
@_KarishmaK
!!!
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@Kamal_t
One student's name is Omega, her sister was Sigma. Their father is an mathematician!
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🎉🎉🎉Woohoo! 3 Yennamalli Lab members got selected for poster presentation at the "Symposium on Big Data Algorithms for Biology 2024" with full registration and accommodation waived. 👏🏼👏🏼👏🏼They will be
@iiscbangalore
on May 31st 2024.
#ProudPI
@_KarishmaK
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Co-authored manuscript accepted in
@SciReports
!!! 🥳🥳🥳This was a work done in 06/07 and it all was due to perseverance of the first authors Dr. Charu Agarwal
@IGIBSocial
and Dr. Debasis Sahu
@NImmunology
that it has now published. The preprint...1/2
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The tradition continues...goodie bags packed for Yennamalli lab members on the occasion of
#AkshayaTritiya
!!!
@Ishwariya13
Also, every
#AkshayaTritiya
I gift stationery to my students. This time, apart from pen, pencil, etc., stickers were included. ☺️
This is a tradition my mom did every year with us.
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Sad day for me. 😭 An ex-colleague of mine passed away in a car accident. Unable to process this news and I can't believe she is no longer with us. 💔 She was a pillar of support when I took a major life decision. I have no words left...😩
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How can India become a scientific superpower? One of the answers lies in tapping into UG research. How can one do that? Read my
#education
column published in
@IndiaBioscience
! I have been publishing research with UGs since 2015, after coming back to India. 👐🇮🇳👐
In our latest
#Education
column,
@StructBioinfo
, a faculty
@SastraUniv
writes why
#undergraduate
students should engage in
#research
and how
#educators
could facilitate it.
Read and share your thoughts using this link 👇
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Thanks to
@BiophysicalSoc
for the wonderful feature on my science journey in this month's newsletter. 🙏There were more stuff to say but, as usual, ran out of space. Read the full issue here:
@ProfPaulYoung
@tanerzsen
@SastraUniv
@madamscientist
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If there is one place, where I can be myself and escape the mundanity of life, and find solace, it is in the library. Enjoyed every moment of it at
@UCBerkeleyLib
!!! 😍🥰
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Watch this! 😎
@poonam_thakur6
did bring her dance shoes! 🤪
After productive days of brainstorming sessions at
#YIM2024
, we all gathered for a lively gala dinner night.🌟
YIs, PDFs, institutional representatives, mentors, speakers, and the IndiaBioscience team came together to dance it off! 🤩
#science
#conference
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Guess whom I met at
#BPS2024
@BiophysicalSoc
?
@vikasnavaratna
and it was a great meeting over coffee and injera breakfast.
@SankarMaheshR
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Remember this tweet? Thanks for your patience...
I can now announce that we are funded by
@DBTIndia
officially!!!!🥳🥳🥳
A year later, I tweeted another watch this space! 🤣😂
Excited to share a major announcement soon! Watch out this space for more details!
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After a looong time, Yennamalli Lab had its first in-person lab meeting in the campus! Looking forward to more such interactions.
#VaccinesWork
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Our article is now published online!
A short 🧵of the journey from inception....Walk with us will you? 1/n
Paper accepted!!!!!
Waking up to this email made the struggle worth it. 😍 🙏
Congratulations to
@s_shricharan
@SankarMaheshR
and Subachandran for all the hard work and perseverance. 👏👏👏 This work was funded by
@ugc_india
BSR grant.
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Please clap!
I said No to something and stood my ground. It worked!!!
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🚨🚨Super excited to announce that Yennamalli lab is going to be at
#ISMBECCB2023
Lyon, France!!! A 🧵!🥳🥳
@iscb
A special session on LLMs on July25 co-chaired by Prof. Lengauer & me with speakers
@sacdallago
@P_Palagi
@Alexbateman1
& Prof. Leslie. 1/7
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Yennamalli lab
@SastraUniv
enjoying the serene campus of
@iiscbangalore
and presenting their work at BD-BIO symposium. 👏🏼👏🏼👏🏼
🎉🎉🎉Woohoo! 3 Yennamalli Lab members got selected for poster presentation at the "Symposium on Big Data Algorithms for Biology 2024" with full registration and accommodation waived. 👏🏼👏🏼👏🏼They will be
@iiscbangalore
on May 31st 2024.
#ProudPI
@_KarishmaK
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💥Another batch of Yennamalli lab graduates this semester.💥 Congratulations to all! Proud of all of you!!! 👏👏👏
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How does color help in making a poster effective? How to get inspired by art to make scientific posters? I will touch upon these topics and tools. Interested? If yes, register for this event. 💯 free and virtual!
@IndiaBioscience
@Ishwariya13
@poonam_thakur6
@sriram_varahan
Over 50% of students polled that they have had no form of training whatsoever in research poster design. A vacuum, considering poster presentations are a key part of sci-comm in their careers. Supported by our outreach grant from
@IndiaBioscience
, we are offering a FREE virtual
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How to collaborate?
Why collaborate?
When to collaborate?
How not to collaborate?
Find answers to the above in this unique jugalbandi with
@vishuguttal
and myself,
@Arushi_Batra28
!!!!
Thanks for the opportunity
@IndiaBioscience
@_KarishmaK
The third episode of our new
#podcast
series, ‘Jugalbandi - A Science Duet' is now live! 🤩
Join us with
@StructBioinfo
and
@vishuguttal
in conversation!🎙️
Podcast team: Hosted by
@Arushi_Batra28
and edited by
@Girija_DD
😁
Listen 👉
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Day 3 of
#YIM2024
!!! Another jam packed exciting day of talks and discussions of how to science in India 🇮🇳! Introducing the second speaker of the day is my highlight of the day!!! 🤗
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What you get when you join Yennamalli-lab??? Lab swag Ofc! 🤣
Authors who get their first paper published, get these. A new tradition with
@ypravanan
and
@rshashank2
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Did you ask what happened in the Yennamalli Lab today? We frantically finalized posters of
@ypravanan
@rshashank2
@Shrivaish1
@sauerkraut93
and
@KaushikLab
and uploaded the videos for
#ismb2022
@iscb
!!! Needless to say, proud of how it turned out and looking forward to QandA!
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Meeting friends like
@satyajeetkhare
and
@PachporTA
made me nostalgic for
@UWMadisonCALS
postdoc days ...
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Currently in poster session with
@girivasan_skr
poster, a collaborative work with Dr. Richa Priyadarshini
@ShivNadarUniv
#arsenic
#deinococcus
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🤩Today is the day for some Yennamalli lab swag!!! 💁🏽♂️
The tradition of the first paper published continues...
@s_shricharan
@SankarMaheshR
@SubachandranJK
👐🎉🥳
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It pains me to see this. Especially Maniatis book. Keep it somewhere or to someone. Not in the bin! I have tons of books that are outdated, yet have kept it safe. This is ripping a part of a soul/spirit!!!
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I published my master's thesis work after ~20 years. So it is never late.
Still sitting on my undergrad thesis that I think has interesting data and kinda wanna publish it. Is it possible to try to publish something that's over 10+ years?
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Why do we have meetings with
@KaushikLab
on Monday? Because it is like a shot of caffeine that keeps us going for the week.
#Collaboration
works!
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Waking up to reviewer's comment is 🥰! "The article is very well designed and realized, presenting a very interesting topic. Considering this reviewer's knowledge of the use of in silico methodologies, I believe that the article can be accepted without the need for adjustments"
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My 50th peer-reviewed paper got accepted today! This is a milestone I have been waiting for some time to celebrate. This was a work in collaboration with Dr. Priyadarshini's lab
@ShivNadarUniv
, also
@rshashank2
's first paper! Congrats to all! (1/2)
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Giving a talk today at Graingenes, USDA branch at Albany, CA about my research.
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😂🤣😂
Google docs to word sucks!
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My student, Mr.Shashank Ravichandran
@rshashank2
been adjudged as the best outgoing BTech student of SCBT
@BiotechSASTRA1
. He is getting an award today at 4pm on the occasion of university day celebrations.
Keep calm and be like Shashank!😁
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Am I just tweeting or listening to the talks at
#YIM2024
? You judge after looking at this pic! 🤔
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🚨🚨🚨This week is
#BiophysicsWeek
@BiophysicalSoc
!!! I have three things to announce.🚨🚨🚨
1. AMA about Biophysics with
@madamscientist
!!! Please do participate on Tuesday, 19th Mar 2-3PM EST
🎉🎉🎉
1/3
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I have not met any celebrities, yet. So, not to be left out of this game, I am going to post the only celebrity I know of.
@_KarishmaK
By talking with her you can drive the science blues away!
NO CHEATING your last saved celebrity picture is your therapist, who is it? (Fwiw, I think that Steve Martin is a fantastic therapist.)
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Celebrating small wins! For the 1st time, somehow, racing against time, we have submitted an international grant proposal.😅Seemed like I cud have given up at the last minute, but collaborators pitched in, positivity in the meeting. Couldn't have imagined otherwise.
#gratitude
🙏
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This is the most shocking thing I have seen so far! Every hiring and promotion committee should check the tweets from this handle! I blame the publish or perish system that has enabled this atrocity.
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🥳🥳🥳Happy to see that our Virtual Tutorial slots for
#ISMB2024
@iscb
has been SOLD OUT!!!
@propicee
@rshashank2
and our team are eagerly looking forward to conducting this tutorial!!! 🥳🥳🥳
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What did I do today?
1. Submitted a manuscript that took 10 hours!!!
2. Submitted a mini proposal.
3. Submitted abstracts.
#Exhausted
#Famished
#Sleepy
💀💀💀
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We joke about paper acceptance as a nice Valentine's day gift, right? Well, it happened to
@MenakaRaj12
's paper. This is a collaborative work with Dr. Priyadarshini at
@ShivNadarUniv
. Glad to see the work housed in a good place!!! 🎉🎉🎉🎊🎊🎊
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And here is Shukrruthi with her poster!!!!
@Sebatina_Louis
and Shukrruthi will be presenting their posters. So is
@MenakaRaj12
! Stop by at our posters (C 105 and C 218) and interact with Yennamalli lab....2/3
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What do you do when it is raining heavily in Paris 🇫🇷? Visit the
@MuseeLouvre
, ofc! 😍
My legs are aching in a good way!!! Bonsoir et Au revoir 🇫🇷 👋👋 Merci beaucoup!!!
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Remember this tweet of mine? Well, today I got the official Notice of Award for my submitted project!!!! This is a BIG! It is a collaborative project with NDRI, Karnal and
@SastraUniv
where I would be responsible for Data Analytics, Machine Learning, and Tool development.
Excited to share a major announcement soon! Watch out this space for more details!
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📢📢📢 I am chuffed beyond words to host Prof. Vasanthi Jayaraman
@frettinglab
from
@UTHealthHouston
and EiC of
@BiophysJ
@BiophysicalSoc
on
#TeachersDay2024
. Her talk will be part of the Knowledge Leadership Forum Lecture series
@SastraUniv
!!!Watch out this space! 📢📢📢
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Last day in the Yennamalli lab for Dharshini and Sreelakshmi!!! On to new opportunities and endeavors to both of them. 🎉🎉🎉
PS: you can clearly see that they are happy leaving the lab! 😅🙃
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#FriendshipDay2024
is not about friendship bracelets anymore. Let's work together and get this work published, funded, and co-mentor the next gen of scientists, is more like it!!!
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Word! Keeping me company these days are
@KaushikLab
@sangishyam
@VaishAnanth
@Krishnaela11
@StHilaireLab
@baym
@PracheeAC
@DasLab_Pombe
@svastiharichar1
@AurijitSarkar
and many more
@NewPI_Slack
!!!!
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Absolutely excited to attend Indian Biophysical Society 2022 meeting (virtually) from tomorrow
@ACTREC_TMC
!!! Also we are presenting 7 posters!!! If you are attending, please do stop by our posters 51, 61, 73, 96, 100, 106 and 107!
@KaushikLab
@sauerkraut93
@rshashank2
1/2
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After so many years, ISMB still holds fort as the best Computational Biology and Bioinformatics conference to look forward to...👏👏👏👏Kudos to the conference chairs
@iscb
for organising at Lyon 🇫🇷.
#ISMBECCB2023
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FYI, for those who think that I have been making only announcements after announcements with good news (Last one pending😉!), I would like to share that in the last few days, two not so good news happened. Ofc, I was disappointed. But, there is a silver lining! Not giving up!!!
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Day 2 of
#YIM2024
started with an exciting talk from
@abhijit_MLab
in an interesting interactive setup at
@iiserbhopal
!!!
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Tomorrow the High-end Workshop on Computational Biology and Data Science begins
@SastraUniv
and it is going to be an exciting 10 days! We have
@compbiologist
giving the inaugural talk on
#computationalbiology
. Followed by
@_amelie_rocks
giving the talk on protein modelling 1/3
1
7
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Who said we should collaborate only about research projects and grants?
Recently collaborated with
@_KarishmaK
@MeghnaSrishti
and
@poonam_thakur6
on ANRF and the need to be flexible and it is field specific. My contribution was on computational needs and what can be done.
That ANRF has the flexibility to build financial norms is an invaluable opportunity to make grants work 'for' science in India. 🏫🧪💵
With
@MeghnaSrishti
@poonam_thakur6
and
@StructBioinfo
, we argue the case using biological sciences as an example.
👉
2
6
28
1
0
19
Many congratulations to
@ypravanan
from
@BiotechSASTRA1
@SastraUniv
on winning the Second prize for presenting his research work on in the Biology and Bioengineering Summer camp organized by
@Sanjeeva_IITB
or
@BsbeIitb
! Much deserved! 👏👏👏 Thanks to
@RajanSekar1
&
@SastraUniv
!
1
3
18
Extremely delighted to host
@madamscientist
from
@CMM_JHU
at
@SastraUniv
tomorrow as part of COMBIGS, student assn activities, and listening to her journey as a scientist.
@BiotechSASTRA1
@BiophysicalSoc
#womeninSTEM
0
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Scientists of Twitter! The world needs more reminders that we're living, breathing human beings.
Quote tweet this with a picture of you doing not-science 🤓
At a jungle camp, playing with my brother's camera!
Scientists of Twitter! The world needs more reminders that we're living, breathing human beings.
Quote tweet this with a picture of you doing not-science 🤓
I Love exploring new forms of art- with mom at a weekend pottery workshop
0
0
61
1
0
19
Day 5 of
#YIM2024
!!!! If yesterday's event and talks were on 🔥, the final day continues the spirit. Then again, all good things come to an end. 😭 A big shoutout to
@_KarishmaK
@rohinimd25
@manjulaharikri2
@VijetaRaghuram
@ankitarathore02
@Arushi_Batra28
, and Shwetha!🙏🏽👏🙏🏽👏🙏🏽
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