Soumya Kundu
@soumyakundu_
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CS PhD candidate @Stanford. Interested in Machine Learning, Regulatory Genomics, and Complex Disorders
Stanford, CA
Joined July 2019
Excited to see our work on identifying functional non-coding variants associated with Alzheimer’s and Parkinson’s disease now out in @NatureGenet
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases.
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RT @junedh_amrute: We use Multiome and HiC to build a comprehensive single cell variant to enhancer to gene map for coronary artery disease…
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RT @kanishkadey: Excited to share our latest preprint, as part of ENCODE4, on a consensus variant-to-function (cV2F) score for functionally…
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RT @amarderstein: Just landed in Denver and I’m excited for #ASHG24! I’ll be giving a talk on Friday at 1:30 based on my postdoc work at…
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RT @dagarfield: A great collaboration with the ML team here at Genentech. Happy to see this pre-print out: (@lal_av…
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RT @amarderstein: 🧵 Thrilled to share our latest in @Nature! We’ve mapped fetal blood development in Down syndrome (DS) using single-cell m…
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RT @lauradmartens: Excited to present “scooby”, which models multi-omic profiles (scRNA-seq coverage & scATAC-seq insertions) directly from…
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RT @aguirre404: Thrilled to share the bulk of my PhD work, now up on bioRxiv! This project brings together aspects of network theory, syst…
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RT @jmschreiber91: Attributions are invaluable in genomics for identifying the drivers of model predictions, but it's easy to make a mistak…
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RT @lal_avantika: We’re excited to release gReLU (, a Python package for deep learning on DNA! gReLU covers all maj…
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RT @jmschreiber91: Sequence-based ML methods (Enformer, ChromBPNet...) are invaluable in genomics but the ecosystem for their *use* after t…
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RT @johnhewtt: I'm on the faculty market! My goal is to build language systems that we understand deeply through discovery and by design,…
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RT @argschwind: Excited to share our latest work on bioRxiv! A highly collaborative effort with @ksmualim @karbal…
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RT @suragnair: Excited to share work with co-first author @immoameen. Gene regulation is a delicate balance b/w cis-regulatory sequence & T…
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RT @jkpritch: I'm delighted to release the first half of my new open-access online textbook in human population genetics:
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RT @CalebLareau: Some big news: I’m absolutely delighted to announce that I will be starting my group this fall in the Computational and Sy…
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RT @kanishkadey: Excited to share that I am starting my lab in the Computational and Systems Biology Program at @MSKCancerCenter in Feb. L…
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RT @doctorcorces: To round out your week, check out this review of the intersection of deep learning and neurodegenerative disease with a f…
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