Dominik Stanojevic
@domstanojevic
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PhD student at University of Zagreb, attached to @astar_gis. AI and bioinformatics. @arsenal fan.
Singapore
Joined March 2019
RT @lovrovrcek: Our new paper is out! We made a lot of progress on our GNN-based de novo genome assembly paradigm and here we present all o…
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@jpelbers Thanks, I will play with this a bit. We will have to re-train variant callers due to different error profiles.
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@jpelbers Hi Jean, do you maybe have f1-scores (for your model and default ONT model) on uncorrected HG002?
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RT @msikic: Happy to present an initial draft of a telomere-to-telomere diploid Indian genome. A joint effort of Jianjun Liu's and my lab s…
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RT @msikic: Are nanopore UL reads only long reads we need? We developed Herro AI error correction model that can co…
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RT @msikic: Long reads metagenome benchmark is out. Highlights. 1. In most cases Kraken, 2. minimap2/ram for slightly higher accuracy. 3. T…
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RT @lovrovrcek: After many months, I'm proud to share our work on untangling genome assembly graphs with GNNs. Or, GNNome Assembly (sorry n…
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RT @msikic: Dedicate enough time to database preparation w/ @jmaricb @KrizanovicK @Sylvain14518009 @NiranjanTW
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RT @msikic: Raven - rapid and easy to use long read de novo assembler which produces the least number of contigs w/…
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RT @msikic: A new release of long read de novo assembler Raven is out! It is much faster on larger genomes than previous versions, produces…
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RT @biorxiv_bioinfo: Metagenomic evidence for a polymicrobial signature of sepsis #biorxiv_bioinfo
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@iiSeymour Thank you for the link. The mapping algorithm assumes that reads correspond to the reference exactly (no variations/modifications present)?
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