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Chris Seymour

@iiSeymour

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VP Advanced Platform Dev, Software, ML @nanopore

Oxford
Joined April 2012
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@iiSeymour
Chris Seymour
22 days
@kirk3gaard @nvidia @nanopore H2 for this dorado to reach instruments 🫡
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@iiSeymour
Chris Seymour
22 days
@dottorscaglione @nvidia P24-A contains A100 Ampere which is compute capability 8.0 and already has this suite of optimisations.. sorry, that was not clear.
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@iiSeymour
Chris Seymour
2 months
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@iiSeymour
Chris Seymour
2 months
@kirk3gaard @RhydianWindsor More of a first step
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@iiSeymour
Chris Seymour
3 months
RT @lh3lh3: The latest hifiasm can directly assemble standard @nanopore simplex R10 reads, without HERRO correction or other preprocessing,…
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@iiSeymour
Chris Seymour
3 months
RT @ChengChhy: Hifiasm 0.21.0 has been released. It now has a beta module for direct assembly of ONT R10 simplex reads. Initial tests with…
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@iiSeymour
Chris Seymour
3 months
RT @vellamike: Exciting news! The latest hifiasm release from @ChengChhy and @lh3lh3 adds beta support for @nanopore simplex R10 reads. Ini…
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@iiSeymour
Chris Seymour
3 months
RT @Stoibs11: New blog: Modified Base Best Practices & Benchmarking for @nanopore 🧬 sequencing Includes: * Raw POD5 files for synthetic gr…
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@iiSeymour
Chris Seymour
3 months
@kirk3gaard Yes, in progress actually! We have just invested in a more diverse set of GPUs in our cluster and are actively adding better support for compute capabilities 8.6 and 8.9 cards.
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@iiSeymour
Chris Seymour
3 months
RT @RosemaryDokos: Low coverage (5x) @nanopore data vs methylation arrays delivers far more data. Great talk by the wasatch team at #ashg20
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@iiSeymour
Chris Seymour
3 months
RT @EricTopol: Even @NatGeo is on it. In the operating room, identifying brain tumors in real time using @nanopore sequencing. "How #AI is…
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@iiSeymour
Chris Seymour
4 months
Before #AppleSilicon; applications like basecalling with dorado at the rates required for @nanopore sequencing were infeasible on Mac but check out the improvements of M4 Max over the first generation M1 Max 👨🏻‍💻🧬📈
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@iiSeymour
Chris Seymour
4 months
RT @bioinformer: Example of the source code (a punch card) for COMPROTEIN - perhaps the first bioinformatics software. Written by Margaret…
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@iiSeymour
Chris Seymour
4 months
v0.8.1 dorado bug fix release 🐛⛔️
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@iiSeymour
Chris Seymour
5 months
RT @AW_NGS: @nanopore simplex corrected or duplex reads are considerably longer than the other long read platform and are of equal or highe…
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