Artem Lomakin
@LomakinAI
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Postdoctoral scientist @StanfordCancer | PhD @emblebi and @DKFZ | studying how cancer cells are evolving in spatial context
San Francisco, USA
Joined July 2018
The wonders of population genetics allow us to reveal the echoes of the tumultuous times our ancestors survived, forever imprinted in our genome. In this thread, I'll share my experience replicating one of my all-time favourite papers by @lh3lh3 and @richard_durbin
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Recently visited SF's @exploratorium (an awesome place, highly recommend). The oscillators section mentioned the synchronisation phenomenon in fireflies but used metronomes as a demo. Metronomes are fine, but they don’t glow! Here’s a simulation of 150 fireflies shoved into a box
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RT @artem_shmatko: How much does your medical history reveal about your future? As a team effort of @MoritzGerstung and @ewanbirney's labs…
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@LukasHeumos @DKFZ If I understand correctly, this is a general trend in Germany, especially for the mandatory internships at the master level. Do you know if @HelmholtzMunich provides compensation?
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RT @DmitryShvarev: Exciting news! I'm looking for talented individuals to join my soon-to-be-launched Emmy Noether group supported by @dfg_…
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@vitaliikl Practiced polyphasic sleep for 2 months. Felt like the joy of living has entirely disappeared. Wouldn't recommend
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Thesis defended and my colleagues awarded me with the fancy hat 🎓 Thank you everyone who've been with me on this journey - you are fantastic scientists and friends! And thank you @MoritzGerstung and @Yates_lab for guiding me through this chapter of my life. It was fun!
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@RuxandraTeslo Some examples. But I guess it would depend on the type of the plot and the other colours you want to combine it with
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@vitaliikl @artem_shmatko In theory, it should work with anything that @artem_shmatko has trained his fancy diffusion model on
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Histopathology image as a QR code v0.1
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The field of spatial genomics has faced challenges with diverse data types and a lack of standardised infrastructure for quite some time. Congratulations to the authors for the release of a much-needed solution!
1/9 Excited to share #SpatiaData, a framework for representing spatially-resolved omics technologies. Great colab w/ @g_palla1 @ky396 @ivirshup @HeidariElyas @TreisTim Marcella @rahulbshrestha @harald_voeh @wolfgangkhuber @MoritzGerstung @notjustmoore @fabian_theis @OliverStegle
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@EBIgoldman I've spent ~2 months working on this side project, but if I were to condense the effort into full-time work, I guess it would indeed take 3 weeks. That being said, I wouldn't have been able to complete it at the start of my PhD, and my intuition might not be entirely accurate :)
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@bricoletc @lh3lh3 @richard_durbin Thanks! Primarily used Illustrator for design, while graphs & populations were created with Matplotlib, then refined in Illustrator. The miniatures inside the chromosomes on the front figure were generated with Midjourney, manually drawing them would've been too time-consuming.
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