Luca Marconato
@LucaMarconato2
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Computational scientist at EMBL in the @OliverStegle lab. Deep learning methods and infrastructures for spatial multi-omics data.
Joined December 2019
Join us in Paris at the @OwkinScience headquarters to work together on spatial omics! #scverse
Owkin and @scverse_team are excited to announce their upcoming hackathon, focused on spatial omics data analysis. 📅 March 17-19, 2025 📍 Owkin office, Paris If you are a bioinformatician interested in spatial biology, this is your chance to make a contribution to open-source packages. What to expect: 💡 Develop and enhance open-source packages for spatial omics analysis 🤝 Network with both Scverse and local bioinformatic communities 🔬 Work with cutting-edge spatial omics data Deadline for applications: February 7th, 2025 Places are limited—Apply now:
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RT @OwkinScience: Owkin and @scverse_team are excited to announce their upcoming hackathon, focused on spatial omics data analysis. 📅 Marc…
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The latest #scverse hackathon on spatial omics has really been a blast! A small example: Day 2 was planned from 8:30 am to 6:00 pm, yet we had people hacking until 9-10 pm! (pics 2-3). Looking forward to the new in-person event!
Recently, we held the first #scverse SpatialData 3-day hackathon in Basel (Switzerland), where we brought together 20 developers from the Python, R, and web communities to work on interoperability, performance, and ergonomics for spatial omics data. Here is what we worked on!
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I had the opportunity to present my work at BIOINFO 2024 in Gyeongju, Korea. It was great to meet previous colleagues from Heidelberg, @pjb7687 and @hyobin_jeong, and be welcomed by such a vibrant research community!
@LucaMarconato2 is giving a super nice tutorial on SpatialData @ BIOINFO2024, KSBi in Gyeongju, Korea.
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In September, I represented the SpatialData team at SCG 2024. I was honored to receive a best poster award; I want to thank my team (in particular @g_palla1, Tim, @WVierdag, @ky396, Sonja, ...) who made the project possible. In the pic, @gtcaa and @MKoutrouli from @scverse_team.
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RT @brianfclarke: 🧵 1/9 Delighted to announce that #DeepRVAT is out today in Nature Genetics! Here's a recap of our tweetorial from the pre…
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The recording for today's webinar will soon be available from @EBItraining. Meanwhile here are the notebooks 🤓 Thanks again for inviting me and @WVierdag, and thanks to the @scverse_team for the collaborative effort in preparing the notebook.
There’s still time to join tomorrow’s #webinar about SpatialData, an #OpenAccess data framework for spatial omics. Registration is free but essential: #bioinformatics #datascience #omics #multiomics #transcriptomics #singlecell #spatialomics
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RT @QuentinBlampey: Happy to share Novae, our new foundation model for spatial transcriptomics data 💫 Load a pre-trained model and start us…
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RT @MKoutrouli: @scverse_team is at #SCG2024 @LucaMarconato2 @gtcaa Thanks to the organising committee. The first day was already EXCELLEN…
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RT @MKoutrouli: First conference, first selfie with some of the incredible @scverse_team core and volunteers! Feeling so grateful to be par…
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RT @WVierdag: Awesome week last week representing both @napari_imaging and #SpatialData @scverse at @EuroSciPy2024. It was great to meet ma…
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Which is more convenient: viewing the "Visium HD bins" as a collection of millions of vector geometries, or as a large multi-channel image given their grid arrangement? In the webinar, @QuentinBlampey, @WVierdag, and I will discuss code and use cases for both approaches.
Your reaction to #VisiumHD data analysis may be somewhere between 🤓 and 😵. Wherever you land, join this webinar to see how intuitive and adaptable high-def #spatialtranscriptomics data exploration can be with tools like Bin2Cell & SpatialData.
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RT @joel_luethi: It's great to be at #EMC2024 and learn more about all the different microscopy techniques. I will be presenting a poster o…
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RT @bayraktar_lab: WebAtlas for visualising single cell & spatial data online is out: With @Muzz_Haniffa @BioinfoTo…
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RT @Severin_1991: 🌟 Join me at #Scverse2024 for the "GPU-Accelerated Single-Cell Analysis with rapids-singlecell" workshop! 📍 Munich, Germ…
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RT @scverse_team: 📢 We're thrilled to announce that we are offering travel grants to cover registration fees and travel expenses for our #s…
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RT @scverse_team: Excited to announce @fabian_theis as one of our invited speakers for the first #scverse2024 conference! Don't miss out on…
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RT @tschaharganeh: 0/ Preprint alert! 🚨 One step closer to solving the genotype ➡ phenotype puzzle in cancer! Led by @BreinigMarco, @Lomak…
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