The EMBO Journal
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Rapid publication of research in molecular, cell & organismal biology. Part of @EMBOPress . Tweets by editors. On Mastodon: @embojournal @sciencemastodon .com
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Pinned Tweet
Issue 20 kick-starts our metabolism review series with
@JohannesMeiser
&
@FrezzaLab
Structure of the type I-F Cas8-HNH system
Fitness cost of spurious phosphorylation
Resource: i-motif distribution in the human genome
Cover:
@MishaKudryashev
and colleagues
0
6
22
See what’s really going on inside your nerves’ ends - real-time analysis of protein mobility at the
#synapse
courtesy of Rizzoli lab
41
792
2K
Should you worry about not finishing revision experiments in time because of the current
#COIVD19
crisis – we don’t. Just contact us to discuss the situation & possible extension. We’ll extend scooping protection to the time needed!
1
99
359
Congratulations to Tasuku Honjo and his team on the
#NobelPrize
in physiology or medicine for opening up
#immunotherapy
. Here, the first paper on PD-1 - already characterized as immunoglobulin superfamily, but years before immunoregulatory role emerged.
3
157
285
New measurements of inner
#mitochondrial
#membrane
potential at resolution of individual
#cristae
reveals unexpected heterogeneity within single
#mitochondria
- find
@OrianShirihai
@marcliesa
and coworkers
@UCLA
8
143
273
Once we received your manuscript
@embojournal
, we know your work was done before that competing paper came out just now - applies also when transferring further to other
@EMBOpress
journals or when you’ve posted recent
#preprint
on
@biorxivpreprint
0
51
209
Reproducible image handling and analysis – commentary by
#BioImageAnalysis
experts
@cmci_
&
@SimonFlyvbjerg
outlines importance of systematic processing description for proper interpretation of
#microscopy
data
5
88
195
ISSUE 15
Review: How RNA Pol II speed shapes transcriptomes
N&V: vacuolar cargo selection by ZZ domains
Cover:
@Paras__Sehgal
@SridharSivasub3
@vinodscaria
et al
and: dendritic cell quorum sensing, post-synaptic eat-me signal, SMC5/6 substrate selection…
0
43
181
Is there an interconnection between
#mitophagy
and
#pexophagy
?
@LabGanley
@mrcppu
@UoDLifeSciences
find that turnover of both
#mitochondria
and
#peroxisomes
depends on
#autophagy
receptor NIX/BNIP3L
8
46
176
Presenting metabolomics analyses: what’s in a number?
As part of a methods advice series, Meiser and Frezza highlight frequent pitfalls and offers guidance related to designing, processing, and communicating metabolomics analyses
@JohannesMeiser
@FrezzaLab
0
49
162
ISSUE 14:
Reciprocal RTK priming on endosomes
Neuronal Miro1 and mitophagy
Spliceosome mutation in human mosaic aneuploidy
Redox homeostasis in Mycobacterium tuberculosis in host cells
Review on apoptosis inhibition treatment
Cover by Duerr et al
3
55
144
Acin-Perez, Stiles,
@OrianShirihai
and colleagues
@UCLA
describe a new method for measuring
#mitochondrial
#respiration
in frozen biological and clinical samples
2
85
150
Issue 16 features circRNA review, highlighted work on phase separation in DNA repair & organellar proteasomes in antigen presentation, senataxin roles in transcription termination, & cancer cell secretion of collagen linearizer. Cover by
@hipp_o_neill
lab
1
81
144
New Issue 19:
Autophagy in human disease Review
Proteostasis reporter mice Resource
Tubulin acetylation & lysosomal acidification
TRIM46 degrading HDAC1 in breast cancer
Cover by Güttler, Aksu, Dobbelstein, Görlich et al &
@TeamSciStories
1
37
126
Final 2019 issue: Mitochondria fixing their own mistakes, a niche for aged muscle stem cells, LIN28A and Parkinson’s disease, pH changes in plant pathogen response, mechanisms of repeat-mediated DNA deletion...
Cover by Takii, Nakai et al
0
57
118
40 years ago, we published our very first
@embojournal
issue!
We reflect on these origins and look ahead in our Editorial in this first issue of 2022
6
24
120
#TGF
beta signaling stimulates
#glutamine
#metabolism
for proline biosynthesis, a process that buffers excessive
#mitochondrial
ROS generation - new work by Craig Thompson lab
@sloan_kettering
0
50
119
New issue! Read on exercise-induced metabolites stimulating muscle hypertrophy, deposition of H2A.Z in plants & of CENP-A in flies, & chromatin players at uncapped telomeres & in endothelial inflammatory response. Recombinase monkeys by
@TheFedePao
et al
1
36
117
New EMBO J resource paper: Glyoxal as an alternative fixative to formaldehyde in immunostaining and super‐resolution microscopy
5
68
110
#11February
marks
#InternationalDayofWomenandGirlsinScience
- watch out for our
@EMBOpress
series of female lead and/or corresponding authors whose work featured on recent covers of
@embojournal
@EmboMolMed
@emboreports
@MolSystBiol
#WomenInSTEM
#WomenInScience
@WomenScienceDay
1
46
111
New review by Koji Okamoto and colleagues gives an update on selective
#autophagy
of
#mitochondria
across species, and how
#mitophagy
pathways cooperate in normal or disease physiology
0
42
111
Issue
#3
of our anniversary year:
Bacterial phage tolerance response
Unusual biogenesis of secretory IgM
N-RNA rings and glycoproteins in RSV virion structure
Cover by Soung-Hun Roh & Stephan Wilkens groups
0
33
105
Inner
#mitochondrial
membrane protein
#prohibitin
#PHB1
regulates
#mtDNA
release and downstream
#inflammatory
innate immune responses
2
43
111
Confused about terminology? See our new review on Molecular definitions of autophagy and related processes
1
93
109
What is the significance of transcription factor binding to regulatory RNA?
@DimpleNotani
and colleagues
@NCBS_Bangalore
show that it stabilizes ERα binding to promoters with weak recognition motifs, but also reduces their transcriptional output
1
21
109
Cover issue 23 by John Rouse
@tarankhanam
et al
Featured: neurotransmitters shaping cortical interneuron migration
Protein crowding in the inner mitochondrial membrane
Human replisome structure
HDAC limiting divergent non-coding transcription
2
27
105
Latest issue! Read about microglia subtypes, yeast models of plant hormone signaling, nitric oxide roles in endothelial redox homeostasis, lncRNA-elicited DNA looping, and converging bacterial nucleotide signaling pathways. Cover by Lepko, Ninkovic et al
0
60
102
Issue 18:
Reviews on Cancer Evolution, EMT Roles in Tumor Progression
plus: Piwi/piRNA affect chromatin, DNA-protein crosslink repair via SUMO, dynamic adaptation in Notch signaling, DNA methylation in adult neurogenesis…
@rustenlab
cover by Todd Schoborg
2
40
98
Positive Ultra-bright Fluorescent Fusion For Identifying Neighbours (PUFFFIN) allows visualization and isolation of surrounding cells in culture, tissues, or embryos, for profiling non-cell-autonomous responses
@_CellySally_
et al
0
34
99
Two oldies but goodies for your weekend read: Tips and tricks for statistics and data presentation from
@BKlausStats
@EMBOjournal
0
59
94
We are saddened and shocked to learn of the sudden passing of John Tooze, long-term
@EMBO
Executive Secretary and forever remembered as the founding editor of
@embojournal
, which he edited from 1982-2003
8
32
91
Cell-free in vitro reconstitution by Shohei Yamamoto
@manuelthery
@Lblanchoin
et al shows that
#actin
network architecture can ensure robust centering or sensitive decentering of
#microtubule
-organizing center
#MTOC
#centrosome
0
25
91
Cellular state switches and
#reprogramming
require proteome adjustments -
@PlantoPhagy
&
@petersen_group
find this to require
#autophagy
in
#Arabidopsis
plant somatic cells
0
34
90
Issue 20 features FOXA2 control of pancreatic cancer cells, cyclin F cell-cycle control via E2Fs, a new convention-defying p53 mutant, & review on embryonic organization by tissue rheology. Cover image by
@katpyxa
&
@feline_lindhout
, Hoogenraad et al
1
25
86
MemPrep: combined with proteomics & quantitative lipidomics, a new method for isolating specific organellar membranes from yeast establishes molecular fingerprints of membrane-based forms of endoplasmic reticulum stress
John Reinhard, Robert Ernst et al
1
31
85
Issue 22:
Inflammation caused by DNA hypomethylation
Evolution of microtubule drug resistance
Featured:
Material transfer by photoreceptor nanotubes, lipid metabolism control by PKM2-TMEM33
Resource:
PET imaging deep neuronal circuits
Cover by
@LabThoma
0
24
81
Final issue of EJ volume 40!
Features on viral super cell fusers and SNX10-mediated LPS sensing
Plus: bacterial dual-function RNA, UBR7 as histone chaperone, asparagine and adipose thermogenesis
@ajknights7
et al cover illustration by
@skrahl
0
22
81
Synergy between
#lipiddroplet
biogenesis and
#mitophagy
sustains cell and tissue integrity upon iron depletion
@tom_mcphagy
and co-workers
@helsinkiuni
2
25
83
What
#actin
probe suits best for studying cellular actin filaments?
#CryoEM
work by Minhajuddin Sirajuddin
@DBT_inStem
Kutti Vinothkumar
@NCBS_Bangalore
et al reveals different principles of actin recognition by
#phalloidin
,
#utrophin
and
#LifeAct
1
24
83
Issue 15 features ERAD doppelgänger EGAD, ERp18 activation of ATF6 in UPR, proteomics markers of melanoma MAPKi resistance, events at ER-mitochondria interfaces, bacterial replication origin unwinding, & review on cancer models. Cover by
@FrischknechtLab
0
33
77
Issue 20:
Catching BAK in action at membranes (incl. N&V)
Subcellular localization of nucleolin
CTCF modulation of UV DNA damage
Neuropeptide-driven circadian neuronal network
...
Cover: Wang, Shao and colleagues
@TeamSciStories
0
29
76
#Auxin
-dependent regulation of cell division rates governs
#Arabidopsis
root
#thermomorphogenesis
Marcel Quint et al
@quintlab
@UniHalle
show a direct temperature-sensing mechanism acts on cell proliferation in the apical
#meristem
to control root growth
0
31
78
#PERK
signaling promotes
#mitochondrial
elongation by remodeling membrane
#phosphatidic
acid
@LabWiseman
@scrippsresearch
0
24
79
A protein condensate that carries specific mRNAs!
The kinesin-3 KIF1C undergoes liquid-liquid phase separation for accumulation of specific transcripts at the cell periphery
1
24
76
New chapter in our ongoing RNA Review Series:
@JavierFCaceres1
et al discuss
#mRNA
quality control mechanisms including non-stop and no-go mRNA decay pathways and the nonsense-mediated mRNA decay pathway
Translation-coupled mRNA quality control mechanisms
1
14
71
PKM2 functions as a histidine kinase to phosphorylate PGAM1 and increase glycolysis shunts in cancer
1
27
72
TOR acts as a metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana
@e_gaquerel
@cnrs_ibmp
@AlexisMaizel
@COSHeidelberg
and coworkers
0
16
72
Cotranscriptional
#demethylation
induces global loss of
#H3K4me2
from active genes in
#Arabidopsis
@TetsujiKakutani
@soinagak
Shusei Mori et al show that histone
#demethylase
LDL3 travels with RNA polymerase II, leaving a record of gene transcription
0
25
71
Cancer Evolution: Darwin and Beyond –
@CharlesSwanton
@kevlitchfield
@_Y_N0T
@TheCrick
@uclnews
discuss evolutionary concepts underlying cancer progression and selective pressure on tumors
0
16
71
Autophagy in major human diseases –
@FedericoPietr12
@deadoc80
et al. bring together broad perspectives on the contribution of
#autophagy
to multiple pathological phenotypes, and discuss the therapeutic potential of autophagy modulation
1
28
70
In the latest issue: Tissue macrophage identity guardians, ATRX roles in ALT telomere maintenance, lymph vessels in a hairy niche, TRAPP stress granules arresting secretion, & cellular plasticity commentary. Cover by Kortzak, Machtens, Fahlke et al
0
34
69
EMBO J commentary on key concepts in statistical analysis and best practices in study design
http://t.co/9qF2Lo6Pdk
http://t.co/BolkjnVBPD
2
67
64
Issue 6: Resources on ncRNA
@genenames
& ovarian cancer organoids; transcription rewires chromatin/lamina interactions, precursor miRNAs hitchhike on endosomes, & excessive proofreading at replication hurdles. Cover by Marlieke Jongsma et al
@UniLeidenNews
1
22
63
CMV
#herpesvirus
subverts innate immunity via specific antagonist m152 of antiviral STING functions, sparing STING activation of NF‐κB & exploiting it for viral replication, find
@BrinkmannLab
@Helmholtz_HZI
@tuBraunschweig
—>
—>
0
45
62
How do
#viruses
exploit host cell
#lipiddroplets
for their replication?
Binbin Ding and coworkers show
#SARSCoV2
ORF6 protein to bring lipid droplets in contact with ER and
#mitochondria
to alter cellular
#lipid
flux
0
19
65
Termination of STING responses is mediated via
#ESCRT
- and
#ubiquitin
-dependent degradation to prevent unwarranted
#inflammation
Katherine Balka
@domdenardo
et al
@MonashBDI
@MonashUni
2
15
64
Clara Sánchez-Rodríguez
@ETH_en
et al use genetically encoded sensors for absolute pH changes across plant plasma membranes in response to biotic stress, reveal direct connections between apoplast acidification, pathogen defense, and plant growth:
1
34
65
Protein complex assembly
#qualitycontrol
in action:
#cryoEM
by
@LabThoma
@FMIscience
shows how
#CRL4
-
#DCAF12
E3
#ligase
engages C-terminal di-Glu
#degron
in CCT5 recognizable only when this subunit is not incorporated into the
#TRiC
/
#CCT
#chaperone
complex
1
15
64
Issue 3: Spotlights on torpedos terminating transcription & nuclear stress bodies aiding intron retention; respiratory supercomplexes, ribosome stalling, all-inclusive adipocyte vesicles & 2x biomechanical events in tissue replacement
Cover:
@LabSchnittger
0
20
62
New issue with… neurological chimera commentary, cGAS in DNA repair, ribosome capture by viral IRES, RNF8 regulation by p97/ATX3, and inflammasome instruction by adaptive immunity
Noncanonical
#phosphorylation
cover by
@phospho
for
@ClaireEEyers
et al
2
23
62
Inhibition of ATP synthase reverse activity in
#mitochondrial
pathologies can restore energy homeostasis, and improve muscle strength in Duchenne Muscular Dystrophy models
@R_AcinPerez
@CrisBenincaPhD
@OrianShirihai
@marcliesa
et al
@UCLA
@IBMB_CSIC
0
22
62
What happens to human cells at very cold temperatures, as during surgery? Andre Furger
@UniofOxford
and colleagues find
#chromatin
compaction and nuclear retention of clock mRNAs, whose release upon rewarming reset the cellular
#circadian
clock
2
21
62
Insights into the mysterious conjugation of
#ubiquitin
-fold modifier
#UFM1
:
@YKulathu
@joshuajk2007
et al
@MRCPPU
identify heterodimeric UFL1/UFBP1 as non-canonical scaffold-type E3
#ligase
and
#CDK5RAP3
as adaptor for
#ribosome
mono-
#UFMylation
1
17
62
Adjusting protein turnover rates to bioenergetic demand:
@langer_lab
@MPIAGE
identify TMBIM5 as a calcium/proton exchanger and inhibitor of m-AAA protease in the
#mitochondrial
inner membrane
0
18
60
New twist to nutrient-controlled
#mTORC1
#lysosome
recruitment and activation:
@Jewell_Lab
@UTSWNews
finds membrane curvature sensor
#ArfGAP1
to suppress it under amino acids starvation independent of GAP activity
0
16
61
Issue 17: Editorial to our Cancer Series & Review on tumor cell competition
Cover by
@brajabandhu_p
et al
Plus: adaptive tolerance against autoimmune reactions, tubulin glutamylation in axonal transport, Tudor staphylococcal nuclease & stress granule
3
26
59
Stress-induced
#mitochondria
-derived
#vesicles
are routed towards degradation in
#lysosomes
by
#Tollip
adaptor and
#Parkin
ubiquitin ligase – find
@TomARyan90
@DavidTumbarello
and coworkers
@sotonbiosci
1
24
60
Issue
#2
with
@TeamSciStories
cover & feature on Rosselot, Moore, Hong et al
Review by
@CedricBlanpain
on tumor states at single-cell resolution
Plus: Amyloid assembly via heterotypic beta interactions; tBID as BAX-like apoptosis effector
0
26
60
Phase separation of Hippo signalling complexes
@ThompsonLab
shows that mechanical strain and growth factor signaling regulate the condensation of Hippo pathway components in Drosophila and mammalian epithelia
0
21
60
#Ribosome
profiling and
#cryoEM
reveals how inhibitory
#codon
pairs and poly(A) tracts stall translation with decoding-incompatible mRNA conformations in the ribosomal decoding center
-> Study by
@petesoi1
, Laura Lessen et al
@BeckmannLab
@GreenLabJHMI
0
20
60
Insights into transcriptional contribution to
#pancreatic
cancer development:
@mkalisz1805
@1jorgeferrer
et al find
#epithelial
program driven by HNF1A and KDM6A suppressing Kras-G12D-driven tumorigenesis
0
22
60
Plant shade avoidance syndrome is controlled by APOLO
#lncRNA
regulation of
#auxin
-related genes in
#Arabidopsis
Federico Ariel
@epilab_arg
and colleagues
0
17
57
How do nutrient-starved cells preserve a basal supply of dormant ribosomes?
Michael Hall and colleagues
@biozentrum
@UniBasel_en
identify conserved TORC1 phosphorylation and inhibition of ribosome-binding factor Stm1/SERBP1 in yeast and human cells
0
14
60
New issue! Read on LRRK2 in ER/mitochondrial tethering, pluripotent state interconversion by Zfp281, centromeric determinants of chromosome-specific aneuploidy, & how plant phosphate status governs host microbial preferences. Cover by Schäfer, Schuck et al
0
18
60
How does
#centrosome
amplification -common in cancer- promote cell migration through confined spaces?
@godinho_susana
et al
@QMBCI
show that it alters intracellular organization via effects on tubulin acetylation and organelle transport along microtubules
3
15
59
Dewson and colleagues
@WEHI_research
show that
#autophagy
clearance of damaged
#mitochondria
and suppression of
#apoptosis
effector proteins are coordinated functions of the Parkin ubiquitin ligase that are lost in
#Parkinsonsdisease
1
29
55
TFEB-dependent lysosome biogenesis is required for senescence
Bernadette Carroll and coworkers
@BristolBiochem
0
27
58
A network of small RNAs regulates sporulation initiation in Clostridioides difficile
@franzifaber
& colleagues
@Helmholtz_HIRI
@Uni_WUE
Small RNA/target interaction maps reveal first RNA chaperone Hfq-dependent RNA interactome in a gram-positive pathogen
1
23
57
Issue 8:
Focus review on RNA-mediated heterochromatin formation
Common adaptations to distinct chromosomal instabilities
cGAS/STING activating immunoproteasomes
Epigenetic reprogramming in plant shade responses
@TeamSciStories
cover for
@Yoo_Lab_RIKEN
1
13
58
#Redox
-sensitive oligomerization of specific cysteine residues makes
#autophagy
receptor
#NDP52
a sensor of ROS from damaged
#mitochondria
, which initiates
#PINK1
/
#Parkin
-mediated
#mitophagy
@VIKorolchuk
and collaborators
@UniofNewcastle
0
13
56
Creativity as antidote to research becoming too predictable
In this commentary, Markus Baer
@groth_anja
@AndersHLund
& Katrine Sonne-Hansen argue why risk-taking & blue-sky research should be actively fostered in budding scientists
Cf.
@nightsciencepod
1
28
54
How are specific dysfunctional
#mitochondria
removed under steady-state conditions?
@DienGiang
@KeriKozul
Yi Cui et al
@LabPagan
@UQ_News
show SCF-
#FBXL4
ubiquitin ligase, mutated in MTDPS13, limits basal
#mitophagy
via
#ubiquitination
of
#NIX
and
#BNIP3
0
18
54
A link between dysfunctional
#mitochondrial
translation and
#lysosomal
function - via HIF1a-regulated NAD+ production supporting local glycolytic ATP generation around lysosomes – find Takeshi Uchiumi and coworkers
0
15
55
Seminal
#ubiquitin
paper from
#40yearsEMBOJ
:
Cecile Pickart and colleagues defined tetra-ubiquitin chains as minimum requirement for proteasomal recognition
0
14
55
The key
#mitotic
kinase
#CyclinB1
/
#CDK1
has a surprising structural role at the
#kinetochore
– as scaffold for the spindle assembly
#checkpoint
that keeps its own degradation in check! Surprising findings by
@AdeSaurin
@AndreaMusacchi1
and coworkers
2
27
53
How do plants memorize heat exposure to be primed for future
#heatstress
?
Isabel Bäurle
@IBaurle
@unipotsdam
et al show that selective
#histone
retention helps to preserve
#chromatin
marks specifically at heat-induced genes in
#Arabidopsis
0
12
54
Issue 8 features
#geranylgeranyl
Golgi donations, transmission of pathogenic
#C9orf72
in ALS/FTD, light-responsive
#miRNA
clearing retinal cells, and
#Chlamydia
rewiring host cell metabolism.
@beatascienceart
cover for Pei, Zheng and coworkers
2
21
52
Our new issue with insights on peroxide-induced cell death, antiviral immune signaling, single-cell transcriptomics of human retina, and more! Featuring review on DNA damage checkpoint signaling at 30 and cover by
@klausenhauser
@structplantbio
et al
0
20
53
Single-cell HiC data show that cohesin-dependent loop extrusion drives the spatial organization of mammalian genomes
@research_imp
@IMBA_Vienna
@viennabiocenter
0
30
53
Combined single-cell sequencing and ex vivo imaging reveals the earliest cell fate markers and mesenchymal cues instructing mouse embryonic mammary branching
Silvia Fre
@slvfre
Bethan Lloyd-Lewis
@BethLloydLewis
and coworkers
0
18
52
How can APC/C E3 recognize & inactivate CDK1 as soon as the spindle checkpoint is switched off?
@LucaCirillo17
, Rose Young et al identify chromosome as key platform recruiting both Cyclin B1 and APC3 via their arginine anchor motifs
@PinesLab
@calfieri84
1
14
53
TOLLIP acts as a cargo adaptor to promote lysosomal degradation of aberrant ER membrane proteins
Hidenori Ichijo et al find TOLLIP piggybacks on the
#PI3P
-dependent
#lysosomal
trafficking machinery to remove
#misfolded
ER proteins
0
10
52
How do mitochondria obtain the ribonucleotides needed for organellar transcription?
@tommacvicar
@CRUK_BI
@langer_lab
@MPIAGE
et al show key fueling role of
#mitochondrial
#nucleoside
diphosphate kinase
#NME6
that phosphorylates
#pyrimidine
nucleosides
0
16
52
Exposed phosphatidylserine on pre- and postsynaptic membranes functions as an ‘eat-me’ signal that mediates developmental synaptic pruning by microglia -
@Michela30586273
@stevens1lab
and coworkers
0
21
52
Best‐practice summary and hands‐on guide on how to most usefully display your data
1
53
51
A CRISPR-Cas9-tagging approach to induce chromosome-specific segmental aneuploidies: assembling ectopic kinetochores at endogenous repeats recapitulates disease-linked missegregation in human cells
@mcclellandlab
@MicrodotLaura
Sara Johnson et al
@QMBCI
0
12
51
Sensor NLR
#immune
proteins activate
#oligomerization
of their NRC helpers in response to
#plantpathogens
@mpcontreras4
@lderevnina
@KamounLab
@TheSainsburyLab
0
11
51
Heterochromatin formation and remodeling by IRTKS condensates counteract cellular senescence
IRTKS contributes to the formation and maintenance of HP1α-driven heterochromatin condensates by promoting HP1α SUMOylation
0
11
51
Get up-to-date on
#RNA
m6A
#methylation
:
@PCodyHe
& Chuan He
@UChiChemistry
review
#posttranscriptional
gene regulation roles of the predominant mRNA modification, mechanisms of its deposition/removal, and the potential of its therapeutic targeting
0
17
49