Ran D Profile
Ran D

@rlognormal

Followers
79
Following
329
Statuses
47

Cloud, HPC, data engineer with a fondness for LCMS proteomics, RNA seq, protein structure, ml and llm workflows. DMs open for researcher collabs.

UK and Europe
Joined April 2024
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@rlognormal
Ran D
4 days
@DeryaTR_ @srikosuri Dr Unutmaz - I will offer gratis bioinformatics, cloud and data engineering support to you for this proposed work, if it can be useful.
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@rlognormal
Ran D
13 days
@eigenrobot @selentelechia @ChatGPTapp Also consider “The viromes from the children with caries were significantly different than the viromes from the children with healthy teeth” (Tang, Baker 2024. The salivary virome during childhood dental caries) maybe it’s not genetic.
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@rlognormal
Ran D
1 month
@mgdurrant Another way to look at it might be: it gives you superpowers to get 10x more done. Remember Ahmdals law vs Gustafson's law? The former said adding more processors is useless beyond a point, the latter says more processors lets you increase the size of problem.
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@rlognormal
Ran D
1 month
@slavov_n Perhaps the solution can be to encourage researchers to publish precisely reproducable and runnable cloud research environments?
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@rlognormal
Ran D
1 month
@bradloncar @kulesatony The funding model needs to be fixed. The societal good is undeniable.
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@rlognormal
Ran D
2 months
@asalam_91 This is very cool and much needed .
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@rlognormal
Ran D
2 months
@anthonygitter @GabriCorso Referring to the repo link at the bottom of the quoted post by @BiologyAIDaily . The repo with the code for the comparison study was in and that whole account is gone. No biggie, the paper has most of the scripts. I was aiming to reproduce it locally.
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@rlognormal
Ran D
2 months
@zack_overflow you can pattern match in python too
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@rlognormal
Ran D
2 months
@Physacourses @sedlazeck @illumina @nanopore @PacBio Pity I missed this, would have been a fun one.
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@rlognormal
Ran D
3 months
@btnaughton df = df.with_columns(col1=pl.lit("val")) df = df.with_columns(col2=pl.Series([1, 2, 3])) little bit cleaner but not a lot
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@rlognormal
Ran D
3 months
@Jiankui_He Why in the embryo? For babies born this year, they will have access to technology ~65 years more advanced that todays, when the disease strikes them. Embryo gene editing much more useful for defects at birth. Alzheimers therapy useful for people in that age group _today_.
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@rlognormal
Ran D
4 months
@MadS100tist Is there a "go to" repo for cell bio images with a friendly license (like creative commons)?
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@rlognormal
Ran D
4 months
@Physacourses @sonia_cruciani @nanopore Excellent course on nanopore sequencing thanks for organizing, and @sonia_cruciani for teaching it.
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@rlognormal
Ran D
4 months
3/3 Heres what the "pore" protein looks like.
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@rlognormal
Ran D
5 months
@RolandDunbrack @buildmodels Pymol has native Linux packages for most major distros. If that’s your personal workstation and have root, you could use apt-get/dnf etc.
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@rlognormal
Ran D
7 months
#python devs, save yourself 24 keystrokes per virtual env that you activate. alias v="source .venv/bin/activate" (put this in your .bashrc)
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@rlognormal
Ran D
7 months
@slavov_n Base space still says “for research only” .
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