Arda Söylev
@asoylev
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Postdoc researcher at @HHU_de @UniklinikDUS @MedHHU working on algorithms for genomics
Joined July 2013
We designed gaftools to serve as a substitute for SAMtools in the context of pangenomes. Key features include, but not limited to: Indexing and sorting alignments, viewing subsets of alignments, realignment using the wavefront alignment algorithm and graph ordering.
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RT @tuncadogan: The 2024 version of the Turkish Bioinformatics Community's flagship conference, HIBIT2024, will be held in İstanbul by Bezm…
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RT @biorxiv_genomic: Complex genetic variation in nearly complete human genomes #biorxiv_genomic
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RT @GenomeWeb: Long-Read Nanopore Sequencing Boosts Structural Variant Analysis in 1000 Genomes Project Dataset
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Very happy to be a part of this great work. Thanks to all the contributors.
Thrilled to announce the largest long-read based SV resource on open samples (1kGP) to date. Highlights include a pangenome augmentation pipeline, sequence resolution of 74k insertions, fine-scale SV classification and evidence for recurrent SV formation. Great team effort:
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Preprint of our latest work is out. With SVarp, we aim to discover haplotype-resolved structural variants on top of a #pangenome reference using #LongReads Many thanks to @tobiasmarschal @JanKorbel5 @tobias_757 @janaebler SamarendraPani
SVarp: pangenome-based structural variant discovery #biorxiv_bioinfo
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From Human Genome Structural Variation Consortium (HGSVC) meeting in Glasgow, Scotland
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RT @BilkentCompGen: New paper by @BilkentCompGen alumnus @asoylev, in collaboration with @Sedacokoglu_ @dilekopter @calkan_cs and @MSomel a…
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I'm happy that this is finally completed and published. Thanks to @MSomel, @calkan_cs, @dilekopter and Seda Cokoglu who made it possible. @CompEvoMetu @BilkentCompGen @ploscompbiol: #ploscompbiolauthor
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RT @dany2k: @UniklinikDUS is looking for a #postdoc in #bioinformatics for research in #multiomics and #AI as part of its Multi-Omics Data…
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I'm happy to start working as a postdoc with @tobiasmarschal at @HHU_de @MedHHU @UniklinikDUS. We will be working on developing algorithms for genomic variations, pangenomes, etc.
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Happy to collaborate with two of our undergrads from @GidaTarimUniv; Sevcan and Mevlüt
Check out our new preprint: we present MTaxi, a method to distinguish between pairs of closely related species from ancient mtDNA sequences
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Highly recommended
I am hiring a #postdoctoral fellow to join us in our recently funded #horizoneurope #EICpathfinder project, BioPIM, to start as soon as May 1st, 2022. Graduate students are also wanted, but #postdocs will be prioritized. Please see:
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We find that inter-individual genetic diversity measured using deletions and SNPs are highly correlated, suggesting that deletion frequencies broadly reflect demographic history.
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RT @BanfieldJill: 1. Major unlock of CRISPR potential empowered by metagenomics #NewMetaCRISPR. I’ve been hoping to see this happen for yea…
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