Kristoffer Sahlin
@krsahlin
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Assistant Professor at the Department of Mathematics, Stockholm University, and a @Scilifelab Fellow. Algorithms, Modeling, Transcriptomics, Genomics.
Stockholm
Joined July 2012
Strobealign (v0.7.1) is out in @genomebiology. In the paper I present a novel short-read aligner based on a new seeding construct. [1/5]
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RT @AlexTomescu0: 🚀Exciting PhD Opportunity🚀 Passionate about 🧬Graph algorithms for real-world genome sequencing? 💻Writing efficient, reus…
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RT @RayanChikhi: We have updated all Logan contigs, now at version 1.1! Contiguity has been much improved (2x) and a duplicated k-mers bug…
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RT @giulio_pibiri: The paper featuring the new "Open-Closed Mod-Minimizer" sampling has been accepted to Algorithms for Molecular Biology!…
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RT @shaomingfu: check out GLBIO 2025: proceedings submissions due Feb 3, 2025. Proceedings papers will be published in Bioinformatics Advan…
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@BQPMalfoy haha 😅 well, the metagenomics community weren't happy with previous limit of 2^24 contigs.. e.g.:
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Strobealign v0.15.0 is released: (1) Allows more indexed contigs (2^32), (2) adds a mode --mcs which increase accuracy (paper on mcs . --mcs is still non-default in this release until we optimize it a bit more. Full changelog here
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RT @RayanChikhi: SeqBim 2024 starts (program , with @krsahlin keynote presenting strobealign, high accuracy and fas…
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RT @mealser: 📢 I am hiring 2 researchers and 3 PhD students 🧑🎓👩🎓 @GeorgiaStateU 🇺🇸🇪🇸 Simple Application: CV & Tell us why you are the be…
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RT @p_peterlongo: 🧬🔍There are 50 petabases of freely-available DNA sequencing data. We introduce "Logan Search" which allows you to search…
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RT @giulio_pibiri: This new paper is a follow up of the WABI'24 paper featuring the mod-minimizer: it introduces the "open-closed" mod-mini…
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@shenwei356 .. and I just found the handle of @ilanshom, I really enjoyed reading the LexicHash paper.
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RT @shenwei356: Excited to share this collaborative work with @ZaminIqbal ! We're thrilled about the potential impact LexicMap could have o…
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RT @pashadag: In @rayarayan, Yoann Dufresne and I comment on the decoupling of ‘population’ pangenome graphs from…
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