Yuchen Ge
@YuchenGe1
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Following
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PhD Candidate, Department of Biomedical Engineering @JHUBME, Johns Hopkins School of Medicine @HopkinsMedicine
Baltimore, US
Joined August 2014
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We analyzed all 5734 of the available WGS samples from The Cancer Genome Atlas, and find far, far smaller numbers of microbes than previous reports that appeared (with great fanfare) in @Nature and @CellCellPress. With @YuchenGe1 et al
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RT @StevenSalzberg1: Looking forward to talking about the cancer microbiome (or lack thereof!) to @broadinstitute and @MIT tomorrow, with mā¦
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RT @StevenSalzberg1: Wow, @nature has retracted the 2020 Poore et al. cancer microbiome paper that we showed ( wasā¦
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RT @StevenSalzberg1: Apparently @nature has a serious concern that we were correctāthat the cancer microbiome is just not there, as we descā¦
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RT @mike_schatz: .@StevenSalzberg1 kicking off the opening session of Genome Informatics on Major data analysis errors invalidate cancer miā¦
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RT @StevenSalzberg1: Our paper on the human gene annotation catalog CHESS, which now includes all of MANE and a more rigorous definition ofā¦
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RT @StevenSalzberg1: Our paper debunking the 2020 cancer microbiome results is now published, in @mbiojournal. We'll see if @nature (or theā¦
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RT @AbrahamGihawi: Our paper examining critical errors in a cancer metagenomics study is now live in @mbiojournal. Work carried out with @Sā¦
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RT @AbrahamGihawi: Many of you would have seen that since releasing this and sending the pre-print to prospective journals, we have been coā¦
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RT @ProfBootyPhD: I think we need to talk about how devastating this cancer microbiome refutation paper from @StevenSalzberg1 and colleagueā¦
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RT @TravisEGibson: @anshulkundaje @tkorem @StevenSalzberg1 @phylogenomics For those interested I forked the rebuttal to the rebuttal and adā¦
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RT @johnstravis: @EricTopol @StevenSalzberg1 @AbrahamGihawi @YuchenGe1 @NewsfromScience has our story up on this dispute
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RT @Prokaryota: One of the most informative, eye-opening, well-written papers I've read in a while. I learned a ton! @AbrahamGihawi @Yuchenā¦
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Major, fatal errors found in the data and methods of a 2020 paper in @Nature, including millions of reads mis-identified as bacteria. The "cancer microbiome" in this study was simply not there. @abrahamgihawi @elapertea @YuchenGe1 @JenniferLu717
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RT @EricTopol: A re-analysis of multiple studies that asserted the role of bacteria in cancer raises questions at to the veracity of the fiā¦
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RT @OpenAI: We've learned a lot from the ChatGPT research preview and have been making important updates based on user feedback. ChatGPT wiā¦
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RT @genome_gov: IāM WONDERING WHEN WE WILL STOP SEEING OURSELVES AS HAVING JUST ONE COMPLETE GENOME, BUT INSTEAD HAVING A COLLECTION OF GENā¦
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RT @StevenSalzberg1: Congratulations Dr. @alaina_shumate on successfully defending your Ph.D. thesis today! Outstanding work on Liftoff, Stā¦
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