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Tim Duignan

@TimothyDuignan

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Modelling and simulation using quantum chemistry, stat mech and neural network potentials #compchem #theochem Researcher at Orbital Materials

Brisbane, Queensland
Joined February 2013
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@TimothyDuignan
Tim Duignan
2 months
So I think I've found another pretty incredible example of the generalisability of neural network potentials: this is a problem I've been dreaming of tackling for a decade but never felt I had the the tools to get at until now: How do potassium ion channels work. 1/n These channels are ubiquitous throughout biology they carry potassium ions out of cells with incredible speed and selectivity and are critical for nerve functioning and neuronal firing etc. Despite this we still don't know basic things about them. In fact, debate has gone on for years in top journals about whether water is co-transported with potassium or not.
@TimothyDuignan
Tim Duignan
8 months
This is the most surprising and exciting result of my career: we were running simulations of NaCl with a neural network potential that implicitly accounts for the effect of the water, ie a continuum solvent model (trained on normal MD) when Junji noticed something strange: 1/n
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@TimothyDuignan
Tim Duignan
3 days
RT @OrbMaterials: Tune in at the link below as @TimothyDuignan explores #electrolyte solutions simulations & the cutting-edge research bein…
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@TimothyDuignan
Tim Duignan
5 days
Another long standing and foundational scientific questions resolved using NNPs. We will see many more of these in the coming years.
@PaesaniLab
Paesani Lab
7 days
🚨 BREAKING: Water’s coolest mystery, solved! 🌊 Our latest study, published in @NaturePhysics, provides the most realistic molecular picture of supercooled #water to date! 🚀 👉 Enabled by our MB-pol #datadriven #manybody potential, we have achieved, for the first time, CCSD(T)-level accuracy for microsecond-long simulations, allowing us to resolve one of the most debated questions in water research: Does supercooled #water have a liquid–liquid critical point?💧❄️ Main results: ✅ We predict a liquid–liquid critical point at ~200 K and ~1,250 atm, consistent with experimental extrapolations where direct measurements of water’s phase behavior are possible. ✅ Our simulations provide compelling evidence that water can exist in two distinct liquid phases at low temperatures and high pressures, resolving a three-decade-long scientific puzzle. ✅ These findings open the door for experimental validation, including potential measurements in nanodroplets. Why is this important? For over 30 years, the existence and precise location of this critical point have been hotly debated. Our MB-pol #datadriven #manybody simulations set a new benchmark for predicting water’s phase behavior across thermodynamic conditions and environments. 🏄‍♀️ Beyond fundamental science, our results pave the way for realistic simulations of water-mediated processes in: 🌧️ Atmospheric and environmental chemistry (e.g., cloud formation, climate modeling) 🌎 Geochemistry and planetary science (e.g., water in extreme conditions) 🧬 Biophysics and biochemistry (e.g., water’s role in biology) 🔬 Materials science (e.g., aqueous solutions in energy applications) We are very grateful to @AFOSR for funding this research through our "MURI: Unraveling the Mechanisms of Ice Nucleation and Anti-Icing through an Integrated Multiscale Approach", and to @DoD_HPCMP, @ACCESSforCI, and @SimonsFdn for providing #GPU and #CPU time! @UCSanDiego @UCSDPhySci @UCSDChemBiochem @HDSIUCSD @SDSC_UCSD
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@TimothyDuignan
Tim Duignan
6 days
RT @owl_posting: How do you make a 250x better vaccine at 1/10 the cost? Develop it in India. (Soham Sankaran, Ep #2) There's a lot of di…
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@TimothyDuignan
Tim Duignan
6 days
RT @MarkNeumannnn: Reminder that OpenAI's latest "SOTA" performance on this not-good benchmark is not surprising if you have looked at the…
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@TimothyDuignan
Tim Duignan
6 days
RT @PaesaniLab: 🚨 BREAKING: Water’s coolest mystery, solved! 🌊 Our latest study, published in @NaturePhysics, provides the most realistic…
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@TimothyDuignan
Tim Duignan
7 days
RT @hausfath: January 2025 was quite unexpectedly the warmest January on record at 1.75C above preindustrial, beating the prior record set…
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@TimothyDuignan
Tim Duignan
8 days
Yeah this is an excellent summary of how to think about LLMs.
@littmath
Daniel Litt
9 days
Overall very impressed compared to o1. Reminds me of talking to someone who knows a huge amount fairly shallowly, and is exceedingly overconfident. But clearly has passed the threshold of genuine usefulness.
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@TimothyDuignan
Tim Duignan
12 days
RT @gppcarleo: Looking for a talented postdoc to join my group @cqs_lab @EPFL_en! 🇨🇭 Research Topics Include: Neural Quantum States, Many…
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@TimothyDuignan
Tim Duignan
12 days
RT @marceldotsci: the recording of the talk i gave a while back about the "invariance is easy to learn" paper with @spozdn and @MicheleCeri
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@TimothyDuignan
Tim Duignan
15 days
Really enjoyed this discussion on all the ways AI tools like Orb can be used to accelerate the incredibly important task of accelerating materials science and biology.
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@TimothyDuignan
Tim Duignan
17 days
RT @fjduarteg: We have a fully funded #compchem #PhD position available to join our team (! If you know potential c…
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@TimothyDuignan
Tim Duignan
17 days
RT @MarkNeumannnn: This symmetric diffusion paper at ICLR is nice (simple idea in retrospect): SymmCD: Symmetry-Preserving Crystal Genera…
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@TimothyDuignan
Tim Duignan
18 days
RT @SynBio1: Every synthetic biologist, every biochemist, when they dream, will sometimes hear a voice calling A whisper on the wind, as i…
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@TimothyDuignan
Tim Duignan
18 days
@pfau Fascinating thanks
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@TimothyDuignan
Tim Duignan
19 days
😭😭😭
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@TimothyDuignan
Tim Duignan
19 days
RT @JChemPhys: We seek a molecular-based theory to predict collective properties of electrolytes. Considering charge and number density, we…
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@TimothyDuignan
Tim Duignan
19 days
RT @andrewwhite01: I've been thinking about how reasoning models will change AI applied to science. The recent papers from Deepseek/AI2/M…
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@TimothyDuignan
Tim Duignan
20 days
@miniapeur Yeah it’s all relative as they say.
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@TimothyDuignan
Tim Duignan
20 days
@jonkhler @DaniloJRezende I think stat mech shows things can be both incredibly useful and deeply philosophically satisfying.
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@TimothyDuignan
Tim Duignan
20 days
@jonkhler @DaniloJRezende Wave function collapse is totally unsatisfying to me and then many worlds to get around is even worse.
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