Jules Samaran
@JulesSamaran
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PhD student @ Institut Pasteur. Research interests include optimal transport and computational biology.
Paris
Joined June 2022
RT @scverse_team: On Tuesday at 2025-02-04 18:00 CET, @jkobject will talk about scPrint, a transformer model that infers gene networks fro…
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RT @LeoGrint: Groundbreaking work, congrats to the team!! 🎉 When I started my PhD 3 years ago, our tabular benchmark showed tree-based mode…
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RT @SibylleMarcotte: Merci pour l’opportunité d’avoir échangé sur mes recherches et mes expériences ! Merci à mes directeurs de thèse @gabr…
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RT @TrimbourR: I had the opportunity to present #HuMMuS at @ECCBinfo — amazing experience! Huge thanks to the organisers for their formida…
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After a very constructive back and forth with editors and reviewers of @NatureComms, scConfluence has now been published @LauCan88 @gabrielpeyre ! I'll present it this afternoon at the poster session of @ECCBinfo (P296) Published version:
🥳 I’m very happy to announce our preprint ! scConfluence combines uncoupled autoencoders with Inverse Optimal Transport to integrate unpaired multimodal single-cell data in shared low dimensional latent space. @LauCan88 @gabrielpeyre
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RT @jeuxolympiques: 𝗕𝗔𝗖𝗞 𝗧𝗢 𝗕𝗔𝗖𝗞 🥋 L'équipe de France 🇫🇷 de #Judo conserve son titre de champion olympique par équipe mixte 🥇 #JeuxOlym…
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RT @jkobject: 🚨🚨 AI in Bio release 🧬 Very happy to share my work on a Large Cell Model for Gene Network Inference. It is for now just a…
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RT @gjhuizing: 🎉 New preprint! STORIES learns a differentiation potential from spatial transcriptomics profiled at…
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RT @razoralign: STORIES: Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
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RT @m_e_sander: 🚨🚨New ICML 2024 Paper: How do Transformers perform In-Context Autoregressive Learning? We invest…
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RT @TrimbourR: Are you interested in cis-regulatory DNA interactions? In 2018, #Cicero introduced an algorithm for inferring cis-coaccessi…
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RT @LauCan88: There is still time to apply for this postdoc position! If you have a machine learning background and you are interested in a…
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RT @gabrielpeyre: If you like ResNet and enjoy Optimal Transport, you might enjoy this paper with Raphaël Barboni and F-X Vialard. We show…
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RT @TrimbourR: HuMMuS is finally out in Bioinformatics ! 🥳 We provide new insights, notably on HuMMuS robustness,…
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scConfluence is available as an open-source Python package extensively documented and seamlessly integrated within the @scverse_team workflow. Visit to try it!
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