Samantha Graham
@samanthapgraham
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PhD candidate at UMN studying the microbiome | she/her
Joined January 2021
New preprint🧵! We're excited to share the 1st release of the Human Microbiome Compendium, a dataset of publicly available 16S sequencing data from 168,000 human gut microbiome samples, processed using a single pipeline and integrated into one big table.
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RT @blekhman: Today we report a compendium of human gut microbiomes with >168,000 samples We discovered distinct microbiome patterns acros…
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getting a PhD in reinstalling tidyverse on the university compute cluster
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Very grateful for the opportunity to present this project at #ISMB2024 today! For anyone interested in learning more, you can check out our website with links to our preprint, R package, and dataset
New preprint🧵! We're excited to share the 1st release of the Human Microbiome Compendium, a dataset of publicly available 16S sequencing data from 168,000 human gut microbiome samples, processed using a single pipeline and integrated into one big table.
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@julientap @blekhman @GreeneScientist @VinceRubinetti @seandavis12 Thank you for sharing! Very exciting to see the dataset being put to use already!
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This has been a huge effort over the last few years, and we couldn’t have done it without everyone involved: @richabdill, @blekhman, @GreeneScientist, @frankwalbert, @VinceRubinetti,@Seandavis12, and the many lab members and others who provided feedback!
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Not only are world regions different from each other, but we don't yet have a full picture of HOW different. We took random subsamples of microbiomes from each region, and in every region outside of Europe/NA, we ran out of samples long before we stopped finding new taxa.
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Lots of great talks and posters at #BoG23! It’s been fun to share what we’re working on and hear about so much new and exciting work
@blekhman talking about his lab’s work (including my friend @samanthapgraham) on the Human Microbiome Compendium at #bog23!
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my grandmother had me over for dinner and learned that passing my prelims made me a PhD candidate instead of student. She spent the rest of the evening calling me a candidate and correcting me every time I said something about being a student 🥺
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@patriciaclaudi0 I keep a blanket at my desk because I get too cold at lab…how would I survive in the wilderness lol
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two years ago I (a senior in college) left my spare laptop charger on campus, figuring I’d get it back when things calmed down in a few weeks. Now I’m a 2nd year phd student at a university 1600 miles away wishing I had that charger
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