Rust for Bioinformatics
@rust4bio
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The home of the awesome Rust for Bioinformatics community. We are disrupting the status quo! And we love #Bioinformatics and #rustlang 🦀🧬💻❤
Everywhere
Joined September 2021
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML, and more with kmertools. #rustlang #bioinformatics
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RT @zeddotdev: Linux when? Linux now. 🎉🐧 For the last 6 months, our team and our open source community have been working hard to bring Zed…
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@zeddotdev is now available for Linux users. My first thoughts on using it are great! #rustlang #bioinformatics
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@CamilleMrcht Thank you for the amazing work and great thread! Is there any link to the slides of this talk ?
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diced: a Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes by @althonos. #bioinformatics #Rust
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RT @IgorMartayan: For my fellow rustaceans in bioinformatics, I made a new crate to iterate over minimizers in a sequence. It supports cust…
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RT @jsantoyo: Bigtools: a high-performance BigWig and BigBed library in rust. #BigWig #BigBed #SequenceData #Rust #Bioinformatics
https://t…
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Do not miss fairy, the new tool by @jim_elevator and @YunWilliamYu. Significant speed improvements in sight for metagenomic binning! #rustlang #bioinformatics
We (me and @YunWilliamYu) built a fast coverage calculator for *multi-sample metagenomic binning* called fairy. Available on github ( and as a short paper on bioRxiv: 1/5
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RT @anicetebou: I've released a new version of xgt (v0.3) which introduces the -k/--insecure option to disable peer SSL verification. This…
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Please reach out if you are interested! Thanks @nomad421!
We had a great meeting & and are moving forward with a GitHub org. for planning & developing foundational building blocks for sequence analysis & related tasks in @rustlang. The org. "rust-seq" can be found here Reach out if you're interested in joining!
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RT @naivebayesian: @shuttle_dev @Lisa_Crossman One of the early adopters in the sciences, or at least earliest experimenters. Also @rust4bi…
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RT @vsbuffalo: 2) recmap, which parses HapMap-formatted recombination maps, and interpolates the map at arbitrary positions. This is a libr…
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RT @vsbuffalo: Two bits of Rust software I've split off from another project so others can use them now: 1) genomap, which is a simple type…
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"We introduce Floria, a novel method designed for rapid and accurate recovery of strain haplotypes from short and long-read... based on minimum error correction read clustering , and a strain-preserving network flow model." #Bioinformatics #rustlang
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