How to trace developmental potential on an absolute scale from single cell expression data? We are thrilled to announce that CytoTRACE 2 is out on bioRxiv! @AaronNewmanLab

RT @StanfordDBDS: The Stanford Center for Cancer Systems Biology invites you to its symposium on 4/22 & explore the systems biology approac…

@mathurarpit21 @AaronNewmanLab @JJAlmagro @gungulati @Wubing44589261 @abulusmani @EarlandNoah @ChloeBSteen @ssikandar Thank you for your interest! We did not use the concept of temporal dynamics.

@Ella_Maru @AaronNewmanLab @JJAlmagro @gungulati @Wubing44589261 @abulusmani @EarlandNoah @ChloeBSteen @ssikandar CytoTRACE 2 successfully predicted the developmental states across various tissues, including two held-out tissues during training. We were particularly excited to see the top genes learned by CytoTRACE 2 with broad tissue conservation. Thank you again for your interests!

@Ella_Maru @AaronNewmanLab @JJAlmagro @gungulati @Wubing44589261 @abulusmani @EarlandNoah @ChloeBSteen @ssikandar Thank you for the great question, Ella! To handle the complexity within tissues and across, CytoTRACE 2 was trained with 175,855 cells across 18 tissue types, carefully curated and annotated.

@ajitjohnson_n @AaronNewmanLab @JJAlmagro @gungulati @Wubing44589261 @abulusmani @EarlandNoah @ChloeBSteen @ssikandar Thank you! 😄

@aadel_chaudhuri Thank you! I appreciate your great contributions.

@RachelGleyzer @AaronNewmanLab @StanfordMed @StanfordDBDS I am excited to work with you!

RT @ChloeBSteen: How to efficiently study spatial transcriptomics data at single cell resolution? We are proud to introduce CytoSPACE, a n…

RT @AaronNewmanLab: Very proud of our first PhD student @gungulati for receiving the 2020 Denise A. Chan Outstanding Thesis award in the @s…

RT @LabMyklebust: Congratulations to Chloe, Bogdan and the teams of Alizadeh, Gentles and Newman for amazing work, developing Ecotyper for…

RT @ChloeBSteen: Tweetorial from fellow co-first author @luca_bogdan introducing #CarcinomaEcoTyper

RT @luca_bogdan: [1/14] I am proud to share a #tweetorial about #EcoTyper, our newest tool for large-scale identification of cell states an…

RT @ChloeBSteen: [1/14] How does one study the tumor microenvironment at the click of a button? Excited to introduce #EcoTyper, our newest…