Hongkai Ji
@jihk99
Followers
784
Following
33
Statuses
41
Professor @jhubiostat, data scientist
Joined September 2014
Exciting collaboration with @Dr_CJackson, @dpardol1, @BettegowdaMDPHD, @Yegnalab, and many others - now published in Science! Grateful for the contributions of our current and past group members: @stephlee51, @ZhichengJi, @HWenpin, and Wentao Zhan. #TeamScience
New research from @Dr_CJackson (@PennNSG) out in @ScienceMagazine identifies 14 distinct immune-suppressing cell subsets in #glioblastoma tumors, shedding light on how the tumors evade the immune system & spread ft. Kate Jones
0
3
7
FUNCODE scores are now available on the ENCODE Data Portal: and UCSC Genome Browser: Huge thanks to @ENCODE_NIH, @GenomeBrowser, @WeixiangFang, and our amazing team for making this possible! 🙌🧬
0
0
1
Big thanks to @GenomeBrowser for integrating FUNCODE into the UCSC Genome Browser!
We are proud to announce our latest Public Hub, FUNCODE. FUNCODE (Functional Conservation of DNA Elements) is a computational framework that quantifies functional conservation between human/mouse regulatory elements using ENCODE functional genomics data.
0
0
2
Unlike deterministic ODE-based methods for individual genes, SDEvelo jointly models multiple genes and incorporates intrinsic noise for better velocity estimation.
0
0
0
@ZhiYu_ACGT @MGHMedicine @MGH_CTEU @HarvardChanSPH @MGH_RI @MonganInstitute @HarvardEpi @mghcvrc Congratulations!🎉
1
0
1
@DiegoSafian @RuzhangZhao @LuJiuyao @kenzhou86 @zhaoni153 Forgot to mention that the GitHub version is the most up-to-date: . The update will take some time to be propagated to CRAN.
1
0
1
@DiegoSafian @RuzhangZhao @LuJiuyao @kenzhou86 @zhaoni153 Thanks for your feedback. The issue should now be resolved. Please feel free to try again.
0
0
1
Some thoughts about the publication ecosystem in statistics and biostatistics:
0
10
30
@wu_biostat @HWenpin @ZhichengJi @ZeyuCHEN19 @EJohnWherry @stephaniehicks We actually have a figure in the supp doc to explain the connection between the noodle and our model - a reviewer suggested it
0
0
3
PRECAST - a data integration method for integrating multiple spatial transcriptomics datasets by aligning shared embeddings of biological effects while accounting for batch effects.
2
23
85
This is jointly with the wonderful @kalhorlab & Zack lab. It is part of @WeixiangFang & Claire Bell's thesis work,
1
0
4