Gokul Ramadoss Profile
Gokul Ramadoss

@gokul_ramadoss

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UCSF grad student when not walking dogs

Joined August 2020
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@gokul_ramadoss
Gokul Ramadoss
8 months
CRISPR has the potential to cure many genetic diseases, but it’s notoriously hard to use in neurons. In this work we tackled 2 of the main hurdles: Cas9 delivery and DNA repair. And we discovered… The rules of genome editing are different in neurons👇🏾
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@gokul_ramadoss
Gokul Ramadoss
8 months
Stay tuned for more exciting neuron editing work from @TheConklinLab! Extremely grateful to @BruceConklin for all the support
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@gokul_ramadoss
Gokul Ramadoss
8 months
@dkjhaunc Could be! It does seem related to Cas9 scanning/interrogating DNA. Maybe R loops, exposing ssDNA, etc or could be disassembly as you point out
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@gokul_ramadoss
Gokul Ramadoss
8 months
@dkjhaunc Yup! I think that’s why we see RRM2 inhibition decrease insertions and increase deletions. Inhibiting this unexpectedly increased nucleotide production
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@gokul_ramadoss
Gokul Ramadoss
8 months
So we used drugs to inhibit RRM2 while editing. For 1 sgRNA, it gave us 50% more editing at an early timepoint! By tripling the rate of 1-base deletions specifically. ❗️Manipulating this unexpected DNA repair factor influenced both the efficiency & precision of neuron editing❗️
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@gokul_ramadoss
Gokul Ramadoss
8 months
Many of these DNA repair genes upregulated by neurons were very unexpected. One of our top hits, RRM2, is usually expressed only during S phase of cell division! What’s it doing in a nondividing cell? And importantly, could it be affecting the outcome of our Cas9 edits?
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