Das Lab
@RDasLab
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Our lab seeks an agile and predictive understanding of how RNAs structurally code for information processing and replication in living systems.
Stanford, CA
Joined April 2019
Never seen RNA structures like these before. Congrats to @RachaelKretsch and rest of team
We discovered 3 RNA families that form homo-oligomeric RNA-only complexes! Studying nature continues to expand my wildest imagination. Read about it: Vivian Wu, Svetlana Shabalina, Hyunbin Lee, Grace Nye, Eugene Koonin, Alex Gao, @RDasLab @chiulab
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@eternagame From open science to the clinics? Design and testing of next-gen COVID mRNA vaccines through OpenVaccine’s latest lab. Puzzle open until Sep. 22, 2024. @eternagame
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RT @eternagame: Come hear about chemical mapping results of 17 RNA puzzles (some natural, some synthetic) and how well different automated…
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Calling the #moleculardynamics community – first CASP target ever for predicting water (ensembles) around a macromolecule: Will be evaluated by direct comparison to #cryoEM on the Tetrahymena ribozyme #RNA!
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RT @eternagame: Attending #RNA2024? Be sure to stop by our table to see an Eterna puzzle in action and hear about our free resources for en…
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RT @voidshapes: Thanks to everyone who made it to our 9th(!) BioML seminar with Rhiju Das (@RDasLab)! Great talk about the motivations & m…
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#CASP16 has begun! First #RNA target R1203 is available for 3D structure prediction. It's an important regulatory element in HIV. Will #deeplearning outperform humans?
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We're hiring! Looking for a Life Sciences Technician II to help us acquire RNA structural data on 1 billion diverse molecules:
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CASP16 is about to begin! Servers for RNA-alone, RNA oligomer, & RNA-protein modeling can do a dry run on Wednesday, Apr 24, 2024: RNA-loving humans very welcome too, the fun begins May 1, 2024.
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EternaFold, RNA secondary structure modeling trained on Eterna data sets, is now on SBgrid:
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All #ribonanza efforts, incl. raw sequencer data, test set labels & estimated uncertainties, & notebooks for training/fine-tuning/inference freely available in Supplemental Table S10 #openscience 4/4
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RT @SchragaSchwartz: What are the forces shaping m6A evolution? Using interspecies hybrids in yeast and mammalian systems, we find that cha…
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Want to help a scientist or student catch the #RNA biology/chemistry bug? Along with @eternagame @cgem_cci, we've created a totally free online Coursera course with Eterna puzzles built in! Check out
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First public seminar on #ribonanza results & downstream tests will be on Feb. 13, 2024, 8am Pacific by @SJ_He: "Ribonanza: deep learning of RNA structure through dual crowdsourcing". Zoom link at #rna structure #deeplearning @kaggle #CASP16
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