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Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ Profile
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ

@OleinikovasV

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Computational Chemist - CADD/TPD; PhD Chemistry at UCL; BA, MSci Natural Sciences, Chemistry (Cantab). @OleinikovasV.bsky.social

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Joined March 2014
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
7 months
๐Ÿ”ฅLooking for a perfect match to your protein? #PINDER #PLINDER โ™ฅ๏ธ
@mmbronstein
Michael Bronstein
7 months
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 days
RT @NaefLuca: โ€œI feel like they always talk about [...] we donโ€™t have enough data [...] You do have enough data โ€” if you were innovative enโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 days
@rdkbio Awesome! Have you benchmarked how well does it perform on novel (dissimilar to previously seen in train) pockets?
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
20 days
RT @vant_ai: ๐Ÿ“ข Rescheduled Our talk with @josejimlun and @YuuuXie on BioEmu has been rescheduled! ๐Ÿ—“๏ธDate: Friday, Feb 7th โฒ๏ธTime: 11am ETโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 months
RT @NaefLuca: Some end of the year updates and future outlook including about the new flexible-docking focused split and leaderboard the teโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 months
End of year notes from #PLINDER team! It's been an incredible year for datasets and benchmarks for the #ML/#CompChem/#CompBio community. Super grateful for the positive responses, constructive feedback and contributions! It's just the start! More in 2025!
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 months
RT @markus_warmuth: Congrats to our CDK2 team @MonteRosaTx. Beautiful work! Go QuEEN!
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 months
RT @wpwalters: @DdelAlamo @prof_ajay_jain Time splits with the pdb are a profoundly bad idea. Groups often deposit a novel structure and tโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
2 months
RT @vant_ai: ๐Ÿš€ Don't miss this week's talk with @jeremyWohlwend and @GabriCorso where they will talk about their new model Boltz-1. ๐Ÿ—“๏ธFridaโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
3 months
RT @JuliaBauman2: How many proteins could be degraded by molecular glues? New paper from the team at @MonteRosaTx suggests it's more than pโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
3 months
@iambic_ai Impressive results on PoseBusters v2 dataset, what time cutoff did you use and are you planning to share the predicted structures for evaluation?
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
4 months
RT @pottslab: New preprint out from the MonteRosa gang on computational approaches to mine the CRBN target space. Revealed new neosubstrateโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
4 months
RT @TorstenSchwede: Big congratulations to David Baker, Demis Hasabis and John Jumper on their well deserved recognition! Their groundbreakโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
5 months
RT @oeaw: #AITHYRA is born! ๐ŸŽ‰ OeAW is founding a new institute at the intersection of #AI & #biomedicine โ€“ the AITHYRA Institute. Meet theโ€ฆ
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
5 months
Cannot wait to see this leaderboard to reveal the real SOTA for ML protein complex prediction models. More on how-to get your model there:
@workshopmlsb
MLSB @ NeurIPS
5 months
Our submission portal on CMT is live! ๐Ÿ‘€ Deadline to submit is Sep 18 11:59pm AoE. See for call for papers and more info. And, now hosts a P/L/INDER leaderboard! Show us your models!
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
5 months
Learn more about #PLINDER in our upcoming virtual workshop with @ISBSIB in September 24, 2024: 4/4
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
5 months
Working on structure prediction methods? ๐Ÿ”ฎ Join our challenge! ๐Ÿ…
@vant_ai
VantAI
5 months
๐Ÿ“ข Missed the last lecture? Here's the key takeaways for the upcoming @workshopmlsb challenge: ๐Ÿงต ๐Ÿ“… The PINDER + PLINDER + MLSB teams are organizing a training workshop Sep 24th - ๐ŸŽฏ Tasks: flexible protein-protein & protein-ligand docking/co-folding (no holo structures available, only sequences + apo or predicted monomer!) People will have time to train methods on PINDER/PLINDER splits (no external data!) after MLSB deadline - leaderboard opens Oct 9, closes Nov 9! To submit to the leaderboard & qualify for the talk, methods will need either a MLSB submission (no acceptance required) or available paper/preprint at leaderboard submission time and provide runnable code with & scripts (I/III) ๐Ÿงต
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@OleinikovasV
Vladas Oleinikovas, PhD ๐Ÿ‡ช๐Ÿ‡บ
6 months
Join us later today to learn more insights about curating PDB for ML datasets without information leakage, and how they can boost your method generalization! #PLINDER & #PINDER
@vant_ai
VantAI
6 months
๐Ÿ“ข Join us next week for a talk with @ZhonglinJC (@nvidia), @janani_hex (@UniBasel_en) & @dannykovtun (@vant_ai) on P(L)INDER: new benchmarks for protein-protein & protein-ligand interactions Hosted by @mmbronstein and @befcorreia ๐Ÿ“…Fri, Aug 30 - 5p CET/11a ET ๐Ÿ“Sign-up:
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