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Olivier Borkowski Profile
Olivier Borkowski

@O_Borkowski

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6,349
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1,787
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1,162
Statuses
6,170

Tenured Scientist in Synthetic Biology (Paris Area) Cell-Free ⦁ SynBio ⦁ Bioengineering ⦁ Microbiology @INRAE_Micalis & @UnivParisSaclay

France
Joined October 2011
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@O_Borkowski
Olivier Borkowski
1 year
I am thrilled to announce the release of our review: "What remains from living cells in bacterial lysate-based cell-free systems" co-authored by Léa Wagner, @Matt_Jules , and myself, now available online at @CSB_Journal . To read the review:
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@O_Borkowski
Olivier Borkowski
2 years
The end of PCR machines? Engineered helicase replaces thermocycler in DNA amplification while retaining desired PCR characteristics
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@O_Borkowski
Olivier Borkowski
2 years
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@O_Borkowski
Olivier Borkowski
1 year
A biological camera that captures and stores images directly into DNA
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@O_Borkowski
Olivier Borkowski
1 year
Membrane protein synthesis: no cells required
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@O_Borkowski
Olivier Borkowski
4 months
Peptide sequencing via reverse translation of peptides into DNA
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@O_Borkowski
Olivier Borkowski
9 months
Cell-free expression of RuBisCO for ATP production in the synthetic cells
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@O_Borkowski
Olivier Borkowski
11 months
Automated Platform for the Plasmid Construction Process
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@O_Borkowski
Olivier Borkowski
7 months
A universal molecular control for DNA, mRNA and protein expression
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@O_Borkowski
Olivier Borkowski
2 months
Now in @NatureComms : Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology
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@O_Borkowski
Olivier Borkowski
2 years
Decoupling Growth and Production by Removing the Origin of Replication from a Bacterial Chromosome
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@O_Borkowski
Olivier Borkowski
1 month
Bioengineering lipid-based synthetic cells for therapeutic protein delivery
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@O_Borkowski
Olivier Borkowski
9 months
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation
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@O_Borkowski
Olivier Borkowski
3 years
Review on: Mathematical Models of Plasmid Population Dynamics
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@O_Borkowski
Olivier Borkowski
3 months
Engineering Bacteria for Environmental Release: Regulatory Challenges and Design Strategies
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@O_Borkowski
Olivier Borkowski
1 year
The expanded CRISPR toolbox for constructing microbial cell factories
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@O_Borkowski
Olivier Borkowski
1 year
A three-node Turing gene circuit forms periodic spatial patterns in bacteria
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@O_Borkowski
Olivier Borkowski
2 months
A new era of Synthetic Biology - microbial community design
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@O_Borkowski
Olivier Borkowski
27 days
Using machine learning to enhance and accelerate synthetic biology
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@O_Borkowski
Olivier Borkowski
7 months
RNA-catalyzed evolution of catalytic RNA
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@O_Borkowski
Olivier Borkowski
4 years
Our paper coupling active learning and cell-free is published in @NatureComms !!! Great work done with @MathildeK25 , Agnès zettor, @pandi_amir , @PaulSoudier , Angelo Batista, @jeanloupfaulon in collaboration with Fabrice Agou team at @institutpasteur
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@O_Borkowski
Olivier Borkowski
1 year
Microbial interactions in theory and practice: when are measurements compatible with models?
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@O_Borkowski
Olivier Borkowski
6 months
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology
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@O_Borkowski
Olivier Borkowski
1 year
Milligrams to kilograms: making microbes work at scale
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@O_Borkowski
Olivier Borkowski
3 years
PlasmidMaker: a Versatile, Automated, and High Throughput End-to-End Platform for Plasmid Construction
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@O_Borkowski
Olivier Borkowski
1 year
Synthetic biology: Learning the way toward high-precision biological design
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@O_Borkowski
Olivier Borkowski
11 months
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@O_Borkowski
Olivier Borkowski
5 days
Microbial community interactions on a chip
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@O_Borkowski
Olivier Borkowski
1 year
Efficient Natural Plasmid Transformation of Vibrio natriegens Enables Zero-capital Molecular Biology
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@O_Borkowski
Olivier Borkowski
2 years
Robust and tunable performance of a cell-free biosensor encapsulated in lipid vesicles
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@O_Borkowski
Olivier Borkowski
7 months
Advancing high-throughput screening systems for synthetic biology and biofoundry
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@O_Borkowski
Olivier Borkowski
2 years
Evidence of a possible multicellular life cycle in Escherichia coli
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@O_Borkowski
Olivier Borkowski
2 years
Legendary bacterial evolution experiment enters new era
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@O_Borkowski
Olivier Borkowski
2 months
Directed evolution of material-producing microorganisms
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@O_Borkowski
Olivier Borkowski
3 years
Cell-Free Gene Expression edited by @smashty @jewettlab_NU full of interesting methods and protocols
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@O_Borkowski
Olivier Borkowski
6 months
“Metabolic burden” explained: stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli
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@O_Borkowski
Olivier Borkowski
2 years
How total mRNA influences cell growth
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@O_Borkowski
Olivier Borkowski
3 years
Production of Rainbow Colorants by Metabolically Engineered Escherichia coli
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@O_Borkowski
Olivier Borkowski
1 year
Does ribosome composition maximize growth rate? The role of RNA instability
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@O_Borkowski
Olivier Borkowski
2 months
Microbial life in slow and stopped lanes
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@O_Borkowski
Olivier Borkowski
7 months
Laboratory evolution reveals transcriptional mechanisms underlying thermal adaptation of Escherichia coli
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@O_Borkowski
Olivier Borkowski
2 months
A synthetic cell-free pathway for biocatalytic upgrading of one-carbon substrates
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@O_Borkowski
Olivier Borkowski
4 years
Synthetic co-cultures: novel avenues for bio-based processes !
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@O_Borkowski
Olivier Borkowski
3 months
Cell-Free Translation Quantification via a Fluorescent Minihelix
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@O_Borkowski
Olivier Borkowski
1 year
Escherichia coli plasmidome maps the game of clones
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@O_Borkowski
Olivier Borkowski
11 months
The story behind the paper "Rapid development of AI-designed antimicrobial peptides via cell-free biosynthesis" by @pandi_amir
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@O_Borkowski
Olivier Borkowski
11 months
Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years
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@O_Borkowski
Olivier Borkowski
1 year
Snowprint: a predictive tool for genetic biosensor discovery
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@O_Borkowski
Olivier Borkowski
7 months
Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology
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@O_Borkowski
Olivier Borkowski
2 years
Very nice work from El karoui lab @SynthSysEd Growth-dependent heterogeneity in the DNA damage response in Escherichia coli
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@O_Borkowski
Olivier Borkowski
3 years
Control engineering and synthetic biology: working in synergy for the analysis and control of microbial systems
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@O_Borkowski
Olivier Borkowski
10 months
A rugged yet easily navigable fitness landscape
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@O_Borkowski
Olivier Borkowski
9 months
Minimization of the E. coli ribosome, aided and optimized by community science
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@O_Borkowski
Olivier Borkowski
1 year
Modular Golden Gate Assembly of Linear DNA Templates for Cell-free Prototyping
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@O_Borkowski
Olivier Borkowski
2 months
How Does Escherichia coli Allocate Proteome?
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@O_Borkowski
Olivier Borkowski
1 year
Evolutionary explanations for heterogeneous behavior in clonal bacterial populations
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@O_Borkowski
Olivier Borkowski
2 months
A roadmap towards the synthesis of Life
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@O_Borkowski
Olivier Borkowski
10 months
A library of reporters of the global regulators of gene expression of Escherichia coli
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@O_Borkowski
Olivier Borkowski
3 months
Emerging Designs and Applications for Biomembrane Biosensors
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@O_Borkowski
Olivier Borkowski
9 months
Lipid vesicle-based molecular robots
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@O_Borkowski
Olivier Borkowski
1 year
Engineering activatable promoters for scalable and multi-input CRISPRa/i circuits
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@O_Borkowski
Olivier Borkowski
4 months
ATP biosensor reveals microbial energetic dynamics and facilitates bioproduction
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@O_Borkowski
Olivier Borkowski
10 months
Building synthetic chromosomes from natural DNA
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@O_Borkowski
Olivier Borkowski
5 months
Cell-free systems and genetic biosensors for accelerating enzyme and pathway prototyping
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@O_Borkowski
Olivier Borkowski
2 years
Modularized synthetic biology enabled intelligent biosensors
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@O_Borkowski
Olivier Borkowski
4 months
High-throughput single-cell transcriptomics of bacteria using combinatorial barcoding
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@O_Borkowski
Olivier Borkowski
2 years
Cell-free protein synthesis systems for vaccine design and production
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@O_Borkowski
Olivier Borkowski
7 months
Ribosome Pool Engineering Increases Protein Biosynthesis Yields
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@O_Borkowski
Olivier Borkowski
11 months
Autotrophic growth of E. coli is achieved by a small number of genetic changes
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@O_Borkowski
Olivier Borkowski
5 years
Have a look at our last bioarxiv paper coupling machine learning and cell-free:
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@O_Borkowski
Olivier Borkowski
1 month
Genetic circuits for metabolic flux optimization
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@O_Borkowski
Olivier Borkowski
10 months
Discovery of antibiotics that selectively kill metabolically dormant bacteria
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@O_Borkowski
Olivier Borkowski
8 months
Ligify: Automated genome mining for ligand-inducible transcription factors
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@O_Borkowski
Olivier Borkowski
1 month
High-throughput DNA engineering by mating bacteria
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@O_Borkowski
Olivier Borkowski
4 years
SynBiopython: an open-source software library for Synthetic Biology
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@O_Borkowski
Olivier Borkowski
4 months
Optimizing protein expression in the One-Pot PURE system: insights into reaction composition and translation efficiency
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@O_Borkowski
Olivier Borkowski
9 months
Life by design: Crafting the future through synthetic biology | Science | AAAS
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Olivier Borkowski
4 months
Colony pattern development of a synthetic bistable switch
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@O_Borkowski
Olivier Borkowski
1 year
Biosensors in microalgae: A roadmap for new opportunities in synthetic biology and biotechnology
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@O_Borkowski
Olivier Borkowski
6 months
Advancing in vivo reprogramming with synthetic biology
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Olivier Borkowski
2 years
Cell-Free PURE System: Evolution and Achievements
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@O_Borkowski
Olivier Borkowski
6 months
Rapid, multiplexed, and enzyme-free nucleic acid detection using programmable aptamer-based RNA switches
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@O_Borkowski
Olivier Borkowski
5 years
Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time
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@O_Borkowski
Olivier Borkowski
11 months
Feedback between stochastic gene networks and population dynamics enables cellular decision making
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@O_Borkowski
Olivier Borkowski
3 years
Interesting review: Engineered Living Hydrogels
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@O_Borkowski
Olivier Borkowski
3 months
Strategies in engineering sustainable biochemical synthesis through microbial systems
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@O_Borkowski
Olivier Borkowski
7 months
Circular Single-Stranded DNA: Discovery, Biological Effects, and Applications
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@O_Borkowski
Olivier Borkowski
3 years
An operator-based expression toolkit for Bacillus subtilis enables fine-tuning of gene expression and biosynthetic pathway regulation
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@O_Borkowski
Olivier Borkowski
10 months
Recent development on DNA & genome synthesis
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@O_Borkowski
Olivier Borkowski
4 months
Synthetic biology advances towards a bio-based society in the era of artificial intelligence
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@O_Borkowski
Olivier Borkowski
5 months
ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets
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@O_Borkowski
Olivier Borkowski
8 months
Trade-off Between Resistance and Persistence in High Cell Density Escherichia Coli Cultures
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@O_Borkowski
Olivier Borkowski
8 months
Machine learning identifies key metabolic reactions in bacterial growth on different carbon sources
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@O_Borkowski
Olivier Borkowski
1 year
Autotrophic growth of E. coli is achieved by a small number of genetic changes
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@O_Borkowski
Olivier Borkowski
5 years
A cell-free biosynthesis platform for modular construction of protein glycosylation pathways
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@O_Borkowski
Olivier Borkowski
1 year
Cell Free Bacteriophage Synthesis from Engineered Strains Improves Yield
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@O_Borkowski
Olivier Borkowski
2 years
From T. Hwa lab: Cellular perception of growth rate and the mechanistic originof bacterial growth law
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@O_Borkowski
Olivier Borkowski
1 year
Dynamics of bacterial operons during genome-wide stresses
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