Dennis Sun (孙丹)
@Mezarque
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scientist, artist, writer, gamer 🏳️🌈👾🖌 currently @ArcadiaScience @[email protected] mezarque at https://t.co/6VkH405sw5
Ohlone Land (Berkeley, CA)
Joined January 2012
Ever wondered which organisms encode your favorite protein? 🤔 Do you like maps? 🗺️ At @ArcadiaScience, we’re developing “ProteinCartography,” a tool that makes interactive maps of protein space. We'd love your feedback on this early version! 🧵 1/9
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RT @NeuroLuebbert: Srinivasan has posted responses to our manuscript documenting data duplication in his papers. They are filled with insul…
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RT @compbiologist: Join the discussion of our latest review at @askalphaxiv. Check out the great comment (by @Mezarque / @ArcadiaScience)…
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RT @bentbraverman: If you’re a fan of DIY lab equipment, you’ll love the phenotype-o-mat, a customizable DIY 96-well plate imager from @Arc…
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I’m at #TAGC24 to talk about ProteinCartography! Stop by and check out our website for our other events
Interested in protein structural comparisons and attending #TAGC24? Join @Mezarque on Fri 3/8 from 11:30–11:45 am in Woodrow Wilson B-D as he discusses the #ProteinCartography pipeline and its role in generating hypotheses for the actin family and polyphosphate proteins!
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RT @Manon_Morin23: At @ArcadiaScience we also share our negative results. Dive into our latest work where we employed trait mapping and evo…
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RT @ArcadiaScience: Can we identify more human-relevant and research-friendly models by unifying various genetic approaches? Join us at #…
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RT @BiggeBrae: How might structural differences within the actin family lead to insights about its proteins’ functions? I’m excited to shar…
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@NKhan212 @ArcadiaScience Thanks for trying out ProteinCartography! We recently released a new version (0.4.2) which addresses some of the reliability issues other users had been facing when using BLAST. Are you facing BLAST reliability issues using this version?
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RT @BiggeBrae: 🚨 An updated version (v0.4.2) of the #ProteinCartography pipeline (our tool for protein comparisons across species) is now a…
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RT @emilycpierce: In our new pub, we investigate disease-associated repeat expansions (dREs). Expansion of DNA repeats can cause neurodegen…
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RT @BiggeBrae: If you’re attending #CellBio2023, don’t forget to send your favorite proteins (submit on ! Then, com…
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RT @ArcadiaScience: We’re heading to #cellbio2023! Check out to see the posters we’re presenting and what else we’l…
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RT @seemaychou: 🧊 Scientists know the importance of failing fast. We wear this like a badge of honor @ArcadiaScience w our published “icebo…
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RT @seemaychou: New job alert: know someone who loves to scale and automate workflows in the lab? We want to apply new tools to onboard a d…
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Come work with us!
Interested in computationally exploring how proteins are related across species? Join us @ArcadiaScience and engage collaboratively to design, create, and iterate on workflows and tools for comparing proteins in diverse organisms. Check out the job ad ➡️
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RT @lizilla93: The enzymes for polyphosphate formation are present in nearly all bacteria, but only some store large amounts of polyP. Why?…
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@OZhulyn @ArcadiaScience It doesn't look like there are many axolotl proteins on UniProt – many UniProt proteins already have AlphaFold predicted structures which you can download with our fetch_accession.py script – so it's likely you'll have to fold your own structures
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@apcamargo_ @ArcadiaScience We plan to assess different dimensionality reduction and clustering methods, as well as downstream methods for evaluating cluster quality + unique features, in future versions of the pipeline We should revisit our use of scanpy as well, so look out for more info in the future!
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