BindingDB
@BindingDb
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Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @[email protected]
San Diego, CA
Joined December 2020
Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data. -- Mike Gilson -- 8 am Pacific Time, Feb 27, 2025 -- Register here:
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I'm getting started on BlueSky as @bmix.bsky.social (Display name Michael K Gilson). See you there!
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We are excited to announce publication of our latest BindingDB update paper!
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BindingDB will be getting a hardware upgrade on Monday Oct 7 to deliver faster response times. There might be some downtime during this process.
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RT @wpwalters: New Practical Cheminformatics Tutorial, “Analyzing Patent Data from BindingDB”.
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Details and an example URL are provided here: Feedback invited! 2/2
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@AminSagar1 We don't have a method currently but are working on it in response to your query. Please feel free to follow up with us via email in the coming weeks if you don't hear from us by then.
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The pharma-provided protein-ligand datasets from the Drug Design Data Resource (D3R) are archived in BindingDB at There are 2554 compounds (238 of them "inactive") with data for multiple protein targets.
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It's cool that @mculecom has created a physical compound library of 65,000 compounds with known targets and activities from the BindingDB dataset! Info: CSV file:
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Happy to report curation of the recent Covid Moonshot paper with data on compounds targeting covid M-protease:
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RT @cdsouthan: Pleased to be presenting (remotely) in the 52nd British Patent Information Professionals (BPIP) meeting
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What if BindingDB were hit by The Big One??? We have now safeguarded our data by cutting a full release to UC San Diego's Digital Library, a long-term archive with replicates in TX and MD, New versions will be released quarterly!
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@victoriacyanide @cdsouthan @KohulanRajan @egonwillighagen @SureChEMBL @Google @WIPO Was there-- sorry to have missed you! Happy to chat, drop an email to bindingdb@gmail.org
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We are excited - and proud - report that, over the last 9 months, BDB curated and shared103K open-access, machine-readable protein-ligand binding data, melding it with the 74K new binding data curated by ChEMBL, for a total 177K increase in our holdings.
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Finally, the rattlesnake and bird. This is a combination I haven't seen before.
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Asking for your input! BindingDB plans to deposit quarterly releases into a long-term archive linked to the UCSD library, so that our data will be available independently of our website. Below is the list of files we propose to deposit; are there any others we should include?
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